Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2782
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,320,529 | - | phhA | Shewana3_2781 | 0.20 | +1.1 |
3,320,617 | - | phhA | Shewana3_2781 | 0.31 | +0.6 |
3,320,660 | - | phhA | Shewana3_2781 | 0.36 | +1.0 |
3,320,737 | - | phhA | Shewana3_2781 | 0.45 | +0.4 |
3,321,005 | + | phhA | Shewana3_2781 | 0.78 | -2.4 |
3,321,045 | + | phhA | Shewana3_2781 | 0.83 | +0.0 |
3,321,124 | - | -0.2 | |||
3,321,138 | - | +0.2 | |||
3,321,210 | + | -0.2 | |||
3,321,335 | + | +1.2 | |||
3,321,359 | + | +0.5 | |||
3,321,456 | + | +1.4 | |||
3,321,808 | + | Shewana3_2782 | 0.33 | +1.3 | |
3,321,838 | + | Shewana3_2782 | 0.37 | -0.4 | |
3,321,838 | + | Shewana3_2782 | 0.37 | +2.4 | |
3,321,897 | + | Shewana3_2782 | 0.43 | +1.6 | |
3,322,002 | + | Shewana3_2782 | 0.55 | +1.6 | |
3,322,284 | + | Shewana3_2782 | 0.86 | +1.6 | |
3,322,284 | + | Shewana3_2782 | 0.86 | +0.5 | |
3,322,323 | - | +0.4 | |||
3,322,332 | + | +1.8 | |||
3,322,658 | + | Shewana3_2783 | 0.24 | +1.8 | |
3,322,791 | + | Shewana3_2783 | 0.37 | +1.9 | |
3,323,199 | + | Shewana3_2783 | 0.78 | +1.9 | |
3,323,248 | + | Shewana3_2783 | 0.82 | +0.8 |
Or see this region's nucleotide sequence