Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2728 and Shewana3_2729 are separated by 16 nucleotides Shewana3_2729 and Shewana3_2730 are separated by 79 nucleotides Shewana3_2730 and Shewana3_2731 are separated by 410 nucleotides
Shewana3_2728: Shewana3_2728 - hypothetical protein (RefSeq), at 3,259,143 to 3,259,592
_2728
Shewana3_2729: Shewana3_2729 - hypothetical protein (RefSeq), at 3,259,609 to 3,260,208
_2729
Shewana3_2730: Shewana3_2730 - hypothetical protein (RefSeq), at 3,260,288 to 3,260,740
_2730
Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861
_2731
Position (kb)
3260
3261 Strain fitness (log2 ratio)
-1
0
1
2 at 3259.391 kb on + strand, within Shewana3_2728 at 3259.405 kb on + strand, within Shewana3_2728 at 3259.412 kb on - strand, within Shewana3_2728 at 3259.428 kb on - strand, within Shewana3_2728 at 3259.448 kb on + strand, within Shewana3_2728 at 3259.456 kb on - strand, within Shewana3_2728 at 3259.460 kb on + strand, within Shewana3_2728 at 3259.460 kb on + strand, within Shewana3_2728 at 3259.468 kb on - strand, within Shewana3_2728 at 3259.579 kb on + strand at 3259.579 kb on + strand at 3259.619 kb on - strand at 3259.644 kb on + strand at 3259.835 kb on - strand, within Shewana3_2729 at 3259.925 kb on + strand, within Shewana3_2729 at 3259.971 kb on - strand, within Shewana3_2729 at 3260.026 kb on - strand, within Shewana3_2729 at 3260.148 kb on + strand, within Shewana3_2729 at 3260.247 kb on + strand at 3260.255 kb on - strand at 3260.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,259,391 + Shewana3_2728 0.55 +2.4 3,259,405 + Shewana3_2728 0.58 -1.6 3,259,412 - Shewana3_2728 0.60 +0.1 3,259,428 - Shewana3_2728 0.63 -0.9 3,259,448 + Shewana3_2728 0.68 -1.1 3,259,456 - Shewana3_2728 0.70 -0.9 3,259,460 + Shewana3_2728 0.70 -0.2 3,259,460 + Shewana3_2728 0.70 +0.4 3,259,468 - Shewana3_2728 0.72 +2.4 3,259,579 + -1.3 3,259,579 + +0.2 3,259,619 - +0.4 3,259,644 + -0.6 3,259,835 - Shewana3_2729 0.38 -0.7 3,259,925 + Shewana3_2729 0.53 +0.4 3,259,971 - Shewana3_2729 0.60 -1.1 3,260,026 - Shewana3_2729 0.69 -0.9 3,260,148 + Shewana3_2729 0.90 -0.4 3,260,247 + +0.8 3,260,255 - -1.5 3,260,905 - +0.2
Or see this region's nucleotide sequence