Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2697 and Shewana3_2698 overlap by 11 nucleotides Shewana3_2698 and Shewana3_2699 are separated by 20 nucleotides
Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369
_2697
Shewana3_2698: Shewana3_2698 - N-acetylglucosamine kinase (RefSeq), at 3,224,359 to 3,225,285
_2698
Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466
_2699
Position (kb)
3224
3225
3226 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3223.375 kb on - strand, within Shewana3_2697 at 3223.745 kb on - strand, within Shewana3_2697 at 3223.814 kb on + strand, within Shewana3_2697 at 3223.883 kb on - strand, within Shewana3_2697 at 3224.324 kb on + strand at 3224.662 kb on - strand, within Shewana3_2698 at 3224.664 kb on + strand, within Shewana3_2698 at 3224.715 kb on + strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.754 kb on - strand, within Shewana3_2698 at 3225.044 kb on - strand, within Shewana3_2698 at 3225.094 kb on - strand, within Shewana3_2698 at 3225.128 kb on - strand, within Shewana3_2698 at 3225.364 kb on + strand at 3225.378 kb on - strand at 3225.683 kb on + strand, within Shewana3_2699 at 3225.691 kb on - strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.905 kb on - strand, within Shewana3_2699 at 3226.083 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.194 kb on - strand, within Shewana3_2699 at 3226.261 kb on - strand, within Shewana3_2699
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,223,375 - Shewana3_2697 0.16 +0.4 3,223,745 - Shewana3_2697 0.47 -0.2 3,223,814 + Shewana3_2697 0.53 +0.5 3,223,883 - Shewana3_2697 0.59 -3.0 3,224,324 + -0.9 3,224,662 - Shewana3_2698 0.33 +0.1 3,224,664 + Shewana3_2698 0.33 -1.4 3,224,715 + Shewana3_2698 0.38 +0.2 3,224,723 - Shewana3_2698 0.39 -0.9 3,224,723 - Shewana3_2698 0.39 +0.3 3,224,754 - Shewana3_2698 0.43 -0.3 3,225,044 - Shewana3_2698 0.74 -0.4 3,225,094 - Shewana3_2698 0.79 +0.8 3,225,128 - Shewana3_2698 0.83 +1.8 3,225,364 + -0.6 3,225,378 - +0.4 3,225,683 + Shewana3_2699 0.32 -1.0 3,225,691 - Shewana3_2699 0.33 -0.1 3,225,799 + Shewana3_2699 0.42 -0.1 3,225,799 + Shewana3_2699 0.42 -1.6 3,225,799 + Shewana3_2699 0.42 +0.4 3,225,807 - Shewana3_2699 0.43 +0.6 3,225,807 - Shewana3_2699 0.43 +0.1 3,225,905 - Shewana3_2699 0.52 -0.3 3,226,083 + Shewana3_2699 0.67 -0.7 3,226,127 + Shewana3_2699 0.71 -0.1 3,226,127 + Shewana3_2699 0.71 -1.0 3,226,194 - Shewana3_2699 0.76 -0.5 3,226,261 - Shewana3_2699 0.82 -1.2
Or see this region's nucleotide sequence