Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2673

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2672 and Shewana3_2673 are separated by 13 nucleotidesShewana3_2673 and Shewana3_2674 are separated by 35 nucleotides Shewana3_2672: Shewana3_2672 - cytochrome C family protein (RefSeq), at 3,190,310 to 3,191,275 _2672 Shewana3_2673: Shewana3_2673 - outer membrane protein, putative (RefSeq), at 3,191,289 to 3,193,427 _2673 Shewana3_2674: Shewana3_2674 - decaheme cytochrome c MtrF (RefSeq), at 3,193,463 to 3,195,382 _2674 Position (kb) 3191 3192 3193 3194Strain fitness (log2 ratio) -2 -1 0 1 2at 3190.376 kb on + strandat 3190.591 kb on + strand, within Shewana3_2672at 3190.632 kb on - strand, within Shewana3_2672at 3191.075 kb on + strand, within Shewana3_2672at 3191.233 kb on - strandat 3191.238 kb on + strandat 3191.238 kb on + strandat 3191.430 kb on + strandat 3191.494 kb on + strandat 3191.662 kb on - strand, within Shewana3_2673at 3191.889 kb on + strand, within Shewana3_2673at 3191.897 kb on - strand, within Shewana3_2673at 3191.945 kb on + strand, within Shewana3_2673at 3191.953 kb on - strand, within Shewana3_2673at 3191.966 kb on - strand, within Shewana3_2673at 3191.981 kb on + strand, within Shewana3_2673at 3192.032 kb on - strand, within Shewana3_2673at 3192.117 kb on + strand, within Shewana3_2673at 3192.311 kb on + strand, within Shewana3_2673at 3192.316 kb on + strand, within Shewana3_2673at 3192.319 kb on - strand, within Shewana3_2673at 3192.366 kb on - strand, within Shewana3_2673at 3192.478 kb on - strand, within Shewana3_2673at 3192.478 kb on - strand, within Shewana3_2673at 3192.478 kb on - strand, within Shewana3_2673at 3192.618 kb on + strand, within Shewana3_2673at 3192.719 kb on - strand, within Shewana3_2673at 3192.777 kb on - strand, within Shewana3_2673at 3192.777 kb on - strand, within Shewana3_2673at 3192.777 kb on - strand, within Shewana3_2673at 3192.806 kb on - strand, within Shewana3_2673at 3192.943 kb on + strand, within Shewana3_2673at 3192.978 kb on + strand, within Shewana3_2673at 3193.085 kb on - strand, within Shewana3_2673at 3193.142 kb on - strand, within Shewana3_2673at 3193.275 kb on + strandat 3193.387 kb on - strandat 3193.853 kb on - strand, within Shewana3_2674at 3194.003 kb on + strand, within Shewana3_2674at 3194.017 kb on - strand, within Shewana3_2674at 3194.281 kb on - strand, within Shewana3_2674at 3194.326 kb on - strand, within Shewana3_2674

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,190,376 + -0.3
3,190,591 + Shewana3_2672 0.29 +2.5
3,190,632 - Shewana3_2672 0.33 +0.3
3,191,075 + Shewana3_2672 0.79 -1.0
3,191,233 - -0.7
3,191,238 + -0.0
3,191,238 + -0.5
3,191,430 + -1.7
3,191,494 + -1.1
3,191,662 - Shewana3_2673 0.17 -1.6
3,191,889 + Shewana3_2673 0.28 -1.6
3,191,897 - Shewana3_2673 0.28 -2.0
3,191,945 + Shewana3_2673 0.31 -0.3
3,191,953 - Shewana3_2673 0.31 +1.4
3,191,966 - Shewana3_2673 0.32 +0.6
3,191,981 + Shewana3_2673 0.32 -0.4
3,192,032 - Shewana3_2673 0.35 -0.0
3,192,117 + Shewana3_2673 0.39 -1.2
3,192,311 + Shewana3_2673 0.48 -2.3
3,192,316 + Shewana3_2673 0.48 +0.5
3,192,319 - Shewana3_2673 0.48 +0.5
3,192,366 - Shewana3_2673 0.50 -0.6
3,192,478 - Shewana3_2673 0.56 -1.9
3,192,478 - Shewana3_2673 0.56 -0.3
3,192,478 - Shewana3_2673 0.56 -1.0
3,192,618 + Shewana3_2673 0.62 -1.1
3,192,719 - Shewana3_2673 0.67 -0.7
3,192,777 - Shewana3_2673 0.70 +1.3
3,192,777 - Shewana3_2673 0.70 -0.1
3,192,777 - Shewana3_2673 0.70 -1.0
3,192,806 - Shewana3_2673 0.71 -0.4
3,192,943 + Shewana3_2673 0.77 -0.3
3,192,978 + Shewana3_2673 0.79 -0.4
3,193,085 - Shewana3_2673 0.84 -0.7
3,193,142 - Shewana3_2673 0.87 -0.9
3,193,275 + -1.4
3,193,387 - -0.1
3,193,853 - Shewana3_2674 0.20 +0.2
3,194,003 + Shewana3_2674 0.28 +1.5
3,194,017 - Shewana3_2674 0.29 +0.7
3,194,281 - Shewana3_2674 0.43 +0.1
3,194,326 - Shewana3_2674 0.45 +0.9

Or see this region's nucleotide sequence