Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2665 and Shewana3_2666 are separated by 9 nucleotides Shewana3_2666 and Shewana3_2667 are separated by 108 nucleotides Shewana3_2667 and Shewana3_2668 are separated by 279 nucleotides
Shewana3_2665: Shewana3_2665 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 3,182,318 to 3,182,809
_2665
Shewana3_2666: Shewana3_2666 - UDP-2,3-diacylglucosamine hydrolase (RefSeq), at 3,182,819 to 3,183,538
_2666
Shewana3_2667: Shewana3_2667 - tRNA hydroxylase (RefSeq), at 3,183,647 to 3,184,417
_2667
Shewana3_2668: Shewana3_2668 - hypothetical protein (RefSeq), at 3,184,697 to 3,185,293
_2668
Position (kb)
3183
3184
3185 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3183.752 kb on - strand, within Shewana3_2667 at 3183.889 kb on + strand, within Shewana3_2667 at 3184.075 kb on - strand, within Shewana3_2667 at 3184.114 kb on + strand, within Shewana3_2667 at 3184.225 kb on - strand, within Shewana3_2667 at 3184.238 kb on + strand, within Shewana3_2667 at 3184.475 kb on + strand at 3184.475 kb on + strand at 3184.482 kb on + strand at 3184.482 kb on + strand at 3184.553 kb on - strand at 3184.599 kb on - strand at 3184.610 kb on - strand at 3184.728 kb on - strand at 3184.892 kb on + strand, within Shewana3_2668 at 3184.987 kb on - strand, within Shewana3_2668 at 3185.037 kb on + strand, within Shewana3_2668 at 3185.147 kb on + strand, within Shewana3_2668
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,183,752 - Shewana3_2667 0.14 +0.2 3,183,889 + Shewana3_2667 0.31 +2.5 3,184,075 - Shewana3_2667 0.56 +0.5 3,184,114 + Shewana3_2667 0.61 +1.5 3,184,225 - Shewana3_2667 0.75 -0.5 3,184,238 + Shewana3_2667 0.77 -0.3 3,184,475 + -0.1 3,184,475 + +0.6 3,184,482 + +1.5 3,184,482 + +0.5 3,184,553 - +0.2 3,184,599 - -0.8 3,184,610 - -0.3 3,184,728 - +0.2 3,184,892 + Shewana3_2668 0.33 -2.1 3,184,987 - Shewana3_2668 0.49 -0.1 3,185,037 + Shewana3_2668 0.57 +0.5 3,185,147 + Shewana3_2668 0.75 -0.7
Or see this region's nucleotide sequence