Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2656

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2655 and Shewana3_2656 are separated by 118 nucleotidesShewana3_2656 and Shewana3_2657 are separated by 149 nucleotides Shewana3_2655: Shewana3_2655 - trans-2-enoyl-CoA reductase (RefSeq), at 3,168,667 to 3,169,869 _2655 Shewana3_2656: Shewana3_2656 - molybdenum-pterin binding (RefSeq), at 3,169,988 to 3,170,200 _2656 Shewana3_2657: Shewana3_2657 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,170,350 to 3,172,215 _2657 Position (kb) 3169 3170 3171Strain fitness (log2 ratio) -1 0 1 2at 3170.087 kb on + strand, within Shewana3_2656at 3170.095 kb on - strand, within Shewana3_2656at 3170.095 kb on - strand, within Shewana3_2656at 3170.850 kb on - strand, within Shewana3_2657at 3170.896 kb on - strand, within Shewana3_2657at 3170.950 kb on - strand, within Shewana3_2657at 3171.187 kb on - strand, within Shewana3_2657

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,170,087 + Shewana3_2656 0.46 +1.0
3,170,095 - Shewana3_2656 0.50 -0.1
3,170,095 - Shewana3_2656 0.50 +1.5
3,170,850 - Shewana3_2657 0.27 +2.0
3,170,896 - Shewana3_2657 0.29 +0.8
3,170,950 - Shewana3_2657 0.32 +1.1
3,171,187 - Shewana3_2657 0.45 +1.5

Or see this region's nucleotide sequence