Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2644 and Shewana3_2645 overlap by 4 nucleotides Shewana3_2645 and Shewana3_2646 are separated by 94 nucleotides Shewana3_2646 and pspB overlap by 14 nucleotides pspB and Shewana3_2648 are separated by 23 nucleotides
Shewana3_2644: Shewana3_2644 - hypothetical protein (RefSeq), at 3,157,848 to 3,159,050
_2644
Shewana3_2645: Shewana3_2645 - protein of unknown function DUF463, YcjX family protein (RefSeq), at 3,159,047 to 3,160,507
_2645
Shewana3_2646: Shewana3_2646 - phage shock protein C, PspC (RefSeq), at 3,160,602 to 3,160,988
_2646
Shewana3_2647: pspB - phage shock protein B (RefSeq), at 3,160,975 to 3,161,208
pspB
Shewana3_2648: Shewana3_2648 - phage shock protein A, PspA (RefSeq), at 3,161,232 to 3,161,915
_2648
Position (kb)
3159
3160
3161 Strain fitness (log2 ratio)
-1
0
1
2 at 3158.208 kb on - strand, within Shewana3_2644 at 3158.225 kb on + strand, within Shewana3_2644 at 3158.459 kb on - strand, within Shewana3_2644 at 3158.623 kb on - strand, within Shewana3_2644 at 3158.812 kb on - strand, within Shewana3_2644 at 3158.891 kb on - strand, within Shewana3_2644 at 3158.893 kb on + strand, within Shewana3_2644 at 3158.893 kb on + strand, within Shewana3_2644 at 3158.893 kb on + strand, within Shewana3_2644 at 3158.893 kb on + strand, within Shewana3_2644 at 3158.893 kb on + strand, within Shewana3_2644 at 3158.901 kb on - strand, within Shewana3_2644 at 3158.901 kb on - strand, within Shewana3_2644 at 3158.901 kb on - strand, within Shewana3_2644 at 3158.901 kb on - strand, within Shewana3_2644 at 3158.901 kb on - strand, within Shewana3_2644 at 3159.046 kb on - strand at 3159.153 kb on - strand at 3159.240 kb on - strand, within Shewana3_2645 at 3159.240 kb on - strand, within Shewana3_2645 at 3159.247 kb on + strand, within Shewana3_2645 at 3159.575 kb on + strand, within Shewana3_2645 at 3159.583 kb on - strand, within Shewana3_2645 at 3159.915 kb on + strand, within Shewana3_2645 at 3159.992 kb on - strand, within Shewana3_2645 at 3160.173 kb on + strand, within Shewana3_2645 at 3160.411 kb on + strand at 3160.411 kb on - strand at 3160.451 kb on - strand at 3160.913 kb on - strand, within Shewana3_2646 at 3161.036 kb on - strand, within pspB at 3161.044 kb on - strand, within pspB at 3161.103 kb on - strand, within pspB at 3161.108 kb on - strand, within pspB at 3161.148 kb on - strand, within pspB at 3161.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,158,208 - Shewana3_2644 0.30 +0.2 3,158,225 + Shewana3_2644 0.31 +0.9 3,158,459 - Shewana3_2644 0.51 +1.2 3,158,623 - Shewana3_2644 0.64 +0.7 3,158,812 - Shewana3_2644 0.80 +0.2 3,158,891 - Shewana3_2644 0.87 -0.6 3,158,893 + Shewana3_2644 0.87 +1.5 3,158,893 + Shewana3_2644 0.87 +1.5 3,158,893 + Shewana3_2644 0.87 -0.3 3,158,893 + Shewana3_2644 0.87 +0.9 3,158,893 + Shewana3_2644 0.87 +1.5 3,158,901 - Shewana3_2644 0.88 +0.2 3,158,901 - Shewana3_2644 0.88 -0.9 3,158,901 - Shewana3_2644 0.88 -0.0 3,158,901 - Shewana3_2644 0.88 +0.1 3,158,901 - Shewana3_2644 0.88 +0.4 3,159,046 - -0.5 3,159,153 - +1.5 3,159,240 - Shewana3_2645 0.13 +0.9 3,159,240 - Shewana3_2645 0.13 -0.5 3,159,247 + Shewana3_2645 0.14 -0.8 3,159,575 + Shewana3_2645 0.36 -0.6 3,159,583 - Shewana3_2645 0.37 -1.5 3,159,915 + Shewana3_2645 0.59 -1.1 3,159,992 - Shewana3_2645 0.65 -0.6 3,160,173 + Shewana3_2645 0.77 +0.2 3,160,411 + +0.2 3,160,411 - -0.5 3,160,451 - -0.4 3,160,913 - Shewana3_2646 0.80 +1.2 3,161,036 - pspB Shewana3_2647 0.26 +0.3 3,161,044 - pspB Shewana3_2647 0.29 +1.0 3,161,103 - pspB Shewana3_2647 0.55 +1.9 3,161,108 - pspB Shewana3_2647 0.57 +0.1 3,161,148 - pspB Shewana3_2647 0.74 +1.3 3,161,247 + -0.6
Or see this region's nucleotide sequence