Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2617 and Shewana3_2618 are separated by 73 nucleotides Shewana3_2618 and Shewana3_2619 are separated by 180 nucleotides Shewana3_2619 and Shewana3_2620 are separated by 80 nucleotides Shewana3_2620 and Shewana3_2621 are separated by 51 nucleotides
Shewana3_2617: Shewana3_2617 - GCN5-related N-acetyltransferase (RefSeq), at 3,122,690 to 3,123,226
_2617
Shewana3_2618: Shewana3_2618 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,123,300 to 3,123,578
_2618
Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594
_2619
Shewana3_2620: Shewana3_2620 - diguanylate cyclase (RefSeq), at 3,125,675 to 3,126,184
_2620
Shewana3_2621: Shewana3_2621 - TPR repeat-containing protein (RefSeq), at 3,126,236 to 3,127,483
_2621
Position (kb)
3123
3124
3125
3126 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3122.833 kb on - strand, within Shewana3_2617 at 3122.873 kb on + strand, within Shewana3_2617 at 3122.890 kb on + strand, within Shewana3_2617 at 3122.920 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3123.067 kb on - strand, within Shewana3_2617 at 3123.069 kb on + strand, within Shewana3_2617 at 3123.079 kb on + strand, within Shewana3_2617 at 3123.151 kb on - strand, within Shewana3_2617 at 3123.173 kb on + strand at 3123.196 kb on + strand at 3123.204 kb on - strand at 3123.343 kb on + strand, within Shewana3_2618 at 3123.507 kb on + strand, within Shewana3_2618 at 3123.523 kb on + strand, within Shewana3_2618 at 3123.531 kb on - strand, within Shewana3_2618 at 3123.536 kb on - strand, within Shewana3_2618 at 3123.697 kb on + strand at 3123.907 kb on - strand at 3124.225 kb on + strand, within Shewana3_2619 at 3124.454 kb on + strand, within Shewana3_2619 at 3124.499 kb on + strand, within Shewana3_2619 at 3124.960 kb on - strand, within Shewana3_2619 at 3125.074 kb on - strand, within Shewana3_2619 at 3125.092 kb on + strand, within Shewana3_2619 at 3125.218 kb on + strand, within Shewana3_2619 at 3125.249 kb on - strand, within Shewana3_2619 at 3125.318 kb on + strand, within Shewana3_2619 at 3125.430 kb on + strand at 3125.699 kb on + strand at 3125.893 kb on - strand, within Shewana3_2620 at 3125.964 kb on + strand, within Shewana3_2620
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,122,833 - Shewana3_2617 0.27 +0.1 3,122,873 + Shewana3_2617 0.34 -2.5 3,122,890 + Shewana3_2617 0.37 -1.2 3,122,920 - Shewana3_2617 0.43 +0.8 3,122,921 - Shewana3_2617 0.43 +1.3 3,122,921 - Shewana3_2617 0.43 -0.8 3,123,067 - Shewana3_2617 0.70 +2.1 3,123,069 + Shewana3_2617 0.71 -1.1 3,123,079 + Shewana3_2617 0.72 -1.1 3,123,151 - Shewana3_2617 0.86 -0.5 3,123,173 + +0.4 3,123,196 + -0.7 3,123,204 - -0.3 3,123,343 + Shewana3_2618 0.15 +0.5 3,123,507 + Shewana3_2618 0.74 -1.3 3,123,523 + Shewana3_2618 0.80 +1.5 3,123,531 - Shewana3_2618 0.83 +1.0 3,123,536 - Shewana3_2618 0.85 +1.4 3,123,697 + -0.7 3,123,907 - +0.3 3,124,225 + Shewana3_2619 0.25 -2.6 3,124,454 + Shewana3_2619 0.38 -0.9 3,124,499 + Shewana3_2619 0.40 -0.6 3,124,960 - Shewana3_2619 0.65 +1.8 3,125,074 - Shewana3_2619 0.72 +1.0 3,125,092 + Shewana3_2619 0.73 -0.6 3,125,218 + Shewana3_2619 0.79 +1.5 3,125,249 - Shewana3_2619 0.81 -1.2 3,125,318 + Shewana3_2619 0.85 -0.5 3,125,430 + +0.5 3,125,699 + +0.7 3,125,893 - Shewana3_2620 0.43 +0.3 3,125,964 + Shewana3_2620 0.57 -1.8
Or see this region's nucleotide sequence