Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2615 and Shewana3_2616 are separated by 22 nucleotides Shewana3_2616 and Shewana3_2617 are separated by 70 nucleotides Shewana3_2617 and Shewana3_2618 are separated by 73 nucleotides Shewana3_2618 and Shewana3_2619 are separated by 180 nucleotides
Shewana3_2615: Shewana3_2615 - hypothetical protein (RefSeq), at 3,121,980 to 3,122,366
_2615
Shewana3_2616: Shewana3_2616 - RNA-binding S4 domain-containing protein (RefSeq), at 3,122,389 to 3,122,619
_2616
Shewana3_2617: Shewana3_2617 - GCN5-related N-acetyltransferase (RefSeq), at 3,122,690 to 3,123,226
_2617
Shewana3_2618: Shewana3_2618 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,123,300 to 3,123,578
_2618
Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594
_2619
Position (kb)
3123
3124 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3122.301 kb on - strand, within Shewana3_2615 at 3122.550 kb on - strand, within Shewana3_2616 at 3122.833 kb on - strand, within Shewana3_2617 at 3122.873 kb on + strand, within Shewana3_2617 at 3122.890 kb on + strand, within Shewana3_2617 at 3122.920 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3123.067 kb on - strand, within Shewana3_2617 at 3123.069 kb on + strand, within Shewana3_2617 at 3123.079 kb on + strand, within Shewana3_2617 at 3123.151 kb on - strand, within Shewana3_2617 at 3123.173 kb on + strand at 3123.196 kb on + strand at 3123.204 kb on - strand at 3123.343 kb on + strand, within Shewana3_2618 at 3123.507 kb on + strand, within Shewana3_2618 at 3123.523 kb on + strand, within Shewana3_2618 at 3123.531 kb on - strand, within Shewana3_2618 at 3123.536 kb on - strand, within Shewana3_2618 at 3123.697 kb on + strand at 3123.907 kb on - strand at 3124.225 kb on + strand, within Shewana3_2619 at 3124.454 kb on + strand, within Shewana3_2619 at 3124.499 kb on + strand, within Shewana3_2619
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,122,301 - Shewana3_2615 0.83 +1.5 3,122,550 - Shewana3_2616 0.70 +2.0 3,122,833 - Shewana3_2617 0.27 +0.1 3,122,873 + Shewana3_2617 0.34 -2.5 3,122,890 + Shewana3_2617 0.37 -1.2 3,122,920 - Shewana3_2617 0.43 +0.8 3,122,921 - Shewana3_2617 0.43 +1.3 3,122,921 - Shewana3_2617 0.43 -0.8 3,123,067 - Shewana3_2617 0.70 +2.1 3,123,069 + Shewana3_2617 0.71 -1.1 3,123,079 + Shewana3_2617 0.72 -1.1 3,123,151 - Shewana3_2617 0.86 -0.5 3,123,173 + +0.4 3,123,196 + -0.7 3,123,204 - -0.3 3,123,343 + Shewana3_2618 0.15 +0.5 3,123,507 + Shewana3_2618 0.74 -1.3 3,123,523 + Shewana3_2618 0.80 +1.5 3,123,531 - Shewana3_2618 0.83 +1.0 3,123,536 - Shewana3_2618 0.85 +1.4 3,123,697 + -0.7 3,123,907 - +0.3 3,124,225 + Shewana3_2619 0.25 -2.6 3,124,454 + Shewana3_2619 0.38 -0.9 3,124,499 + Shewana3_2619 0.40 -0.6
Or see this region's nucleotide sequence