Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2611 and Shewana3_2612 overlap by 4 nucleotides Shewana3_2612 and Shewana3_2613 are separated by 280 nucleotides
Shewana3_2611: Shewana3_2611 - exonuclease SbcC, putative (RefSeq), at 3,115,569 to 3,118,625
_2611
Shewana3_2612: Shewana3_2612 - exodeoxyribonuclease I subunit D (RefSeq), at 3,118,622 to 3,119,824
_2612
Shewana3_2613: Shewana3_2613 - hypothetical protein (RefSeq), at 3,120,105 to 3,120,914
_2613
Position (kb)
3118
3119
3120 Strain fitness (log2 ratio)
-1
0
1
2 at 3118.334 kb on + strand at 3118.368 kb on + strand at 3118.725 kb on + strand at 3118.738 kb on - strand at 3118.861 kb on + strand, within Shewana3_2612 at 3118.873 kb on - strand, within Shewana3_2612 at 3118.886 kb on + strand, within Shewana3_2612 at 3118.928 kb on - strand, within Shewana3_2612 at 3118.966 kb on + strand, within Shewana3_2612 at 3119.056 kb on - strand, within Shewana3_2612 at 3119.309 kb on + strand, within Shewana3_2612 at 3119.435 kb on - strand, within Shewana3_2612 at 3119.557 kb on - strand, within Shewana3_2612 at 3119.600 kb on + strand, within Shewana3_2612 at 3119.719 kb on - strand at 3119.884 kb on - strand at 3120.023 kb on + strand at 3120.054 kb on - strand at 3120.081 kb on + strand at 3120.220 kb on - strand, within Shewana3_2613 at 3120.329 kb on - strand, within Shewana3_2613 at 3120.407 kb on - strand, within Shewana3_2613 at 3120.646 kb on - strand, within Shewana3_2613 at 3120.678 kb on + strand, within Shewana3_2613 at 3120.759 kb on + strand, within Shewana3_2613
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,118,334 + -0.0 3,118,368 + -0.8 3,118,725 + -1.0 3,118,738 - -0.5 3,118,861 + Shewana3_2612 0.20 -0.6 3,118,873 - Shewana3_2612 0.21 +0.2 3,118,886 + Shewana3_2612 0.22 -0.5 3,118,928 - Shewana3_2612 0.25 -1.5 3,118,966 + Shewana3_2612 0.29 +2.5 3,119,056 - Shewana3_2612 0.36 +0.3 3,119,309 + Shewana3_2612 0.57 -1.4 3,119,435 - Shewana3_2612 0.68 +0.1 3,119,557 - Shewana3_2612 0.78 -0.8 3,119,600 + Shewana3_2612 0.81 -0.8 3,119,719 - +1.4 3,119,884 - +0.2 3,120,023 + -0.4 3,120,054 - +0.2 3,120,081 + -0.2 3,120,220 - Shewana3_2613 0.14 +0.1 3,120,329 - Shewana3_2613 0.28 -0.2 3,120,407 - Shewana3_2613 0.37 +0.5 3,120,646 - Shewana3_2613 0.67 +1.6 3,120,678 + Shewana3_2613 0.71 +1.0 3,120,759 + Shewana3_2613 0.81 +0.6
Or see this region's nucleotide sequence