Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2606

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2605 and Shewana3_2606 are separated by 301 nucleotidesShewana3_2606 and Shewana3_2607 are separated by 98 nucleotidesShewana3_2607 and Shewana3_2608 are separated by 57 nucleotides Shewana3_2605: Shewana3_2605 - patatin (RefSeq), at 3,109,370 to 3,110,317 _2605 Shewana3_2606: Shewana3_2606 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,110,619 to 3,111,968 _2606 Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504 _2607 Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071 _2608 Position (kb) 3110 3111 3112Strain fitness (log2 ratio) -1 0 1 2at 3109.719 kb on - strand, within Shewana3_2605at 3109.722 kb on + strand, within Shewana3_2605at 3109.741 kb on - strand, within Shewana3_2605at 3109.821 kb on + strand, within Shewana3_2605at 3109.821 kb on + strand, within Shewana3_2605at 3109.821 kb on + strand, within Shewana3_2605at 3109.829 kb on + strand, within Shewana3_2605at 3109.837 kb on - strand, within Shewana3_2605at 3109.907 kb on + strand, within Shewana3_2605at 3109.985 kb on + strand, within Shewana3_2605at 3110.034 kb on + strand, within Shewana3_2605at 3110.253 kb on + strandat 3110.366 kb on + strandat 3110.580 kb on + strandat 3111.988 kb on - strandat 3112.052 kb on + strandat 3112.163 kb on - strand, within Shewana3_2607at 3112.231 kb on - strand, within Shewana3_2607at 3112.301 kb on + strand, within Shewana3_2607at 3112.552 kb on + strandat 3112.560 kb on - strandat 3112.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,109,719 - Shewana3_2605 0.37 +0.2
3,109,722 + Shewana3_2605 0.37 -0.6
3,109,741 - Shewana3_2605 0.39 +2.1
3,109,821 + Shewana3_2605 0.48 +0.6
3,109,821 + Shewana3_2605 0.48 +1.0
3,109,821 + Shewana3_2605 0.48 -0.3
3,109,829 + Shewana3_2605 0.48 +0.2
3,109,837 - Shewana3_2605 0.49 +0.7
3,109,907 + Shewana3_2605 0.57 +2.1
3,109,985 + Shewana3_2605 0.65 +1.6
3,110,034 + Shewana3_2605 0.70 -0.0
3,110,253 + +0.8
3,110,366 + +0.2
3,110,580 + -0.3
3,111,988 - -0.3
3,112,052 + +0.6
3,112,163 - Shewana3_2607 0.22 -1.4
3,112,231 - Shewana3_2607 0.37 +1.6
3,112,301 + Shewana3_2607 0.53 +1.8
3,112,552 + +1.6
3,112,560 - -0.3
3,112,560 - -0.8

Or see this region's nucleotide sequence