Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2605 and Shewana3_2606 are separated by 301 nucleotides Shewana3_2606 and Shewana3_2607 are separated by 98 nucleotides Shewana3_2607 and Shewana3_2608 are separated by 57 nucleotides
Shewana3_2605: Shewana3_2605 - patatin (RefSeq), at 3,109,370 to 3,110,317
_2605
Shewana3_2606: Shewana3_2606 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,110,619 to 3,111,968
_2606
Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504
_2607
Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071
_2608
Position (kb)
3110
3111
3112 Strain fitness (log2 ratio)
-1
0
1
2 at 3109.719 kb on - strand, within Shewana3_2605 at 3109.722 kb on + strand, within Shewana3_2605 at 3109.741 kb on - strand, within Shewana3_2605 at 3109.821 kb on + strand, within Shewana3_2605 at 3109.821 kb on + strand, within Shewana3_2605 at 3109.821 kb on + strand, within Shewana3_2605 at 3109.829 kb on + strand, within Shewana3_2605 at 3109.837 kb on - strand, within Shewana3_2605 at 3109.907 kb on + strand, within Shewana3_2605 at 3109.985 kb on + strand, within Shewana3_2605 at 3110.034 kb on + strand, within Shewana3_2605 at 3110.253 kb on + strand at 3110.366 kb on + strand at 3110.580 kb on + strand at 3111.988 kb on - strand at 3112.052 kb on + strand at 3112.163 kb on - strand, within Shewana3_2607 at 3112.231 kb on - strand, within Shewana3_2607 at 3112.301 kb on + strand, within Shewana3_2607 at 3112.552 kb on + strand at 3112.560 kb on - strand at 3112.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,109,719 - Shewana3_2605 0.37 +0.2 3,109,722 + Shewana3_2605 0.37 -0.6 3,109,741 - Shewana3_2605 0.39 +2.1 3,109,821 + Shewana3_2605 0.48 +0.6 3,109,821 + Shewana3_2605 0.48 +1.0 3,109,821 + Shewana3_2605 0.48 -0.3 3,109,829 + Shewana3_2605 0.48 +0.2 3,109,837 - Shewana3_2605 0.49 +0.7 3,109,907 + Shewana3_2605 0.57 +2.1 3,109,985 + Shewana3_2605 0.65 +1.6 3,110,034 + Shewana3_2605 0.70 -0.0 3,110,253 + +0.8 3,110,366 + +0.2 3,110,580 + -0.3 3,111,988 - -0.3 3,112,052 + +0.6 3,112,163 - Shewana3_2607 0.22 -1.4 3,112,231 - Shewana3_2607 0.37 +1.6 3,112,301 + Shewana3_2607 0.53 +1.8 3,112,552 + +1.6 3,112,560 - -0.3 3,112,560 - -0.8
Or see this region's nucleotide sequence