Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2568 and Shewana3_2569 are separated by 433 nucleotides Shewana3_2569 and rrmA are separated by 306 nucleotides rrmA and Shewana3_2571 are separated by 33 nucleotides
Shewana3_2568: Shewana3_2568 - sulphate transporter (RefSeq), at 3,071,714 to 3,073,273
_2568
Shewana3_2569: Shewana3_2569 - cold-shock DNA-binding protein family protein (RefSeq), at 3,073,707 to 3,073,916
_2569
Shewana3_2570: rrmA - 23S rRNA methyltransferase A (RefSeq), at 3,074,223 to 3,075,038
rrmA
Shewana3_2571: Shewana3_2571 - hypothetical protein (RefSeq), at 3,075,072 to 3,075,878
_2571
Position (kb)
3074
3075
3076 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3073.473 kb on + strand at 3073.497 kb on - strand at 3074.282 kb on + strand at 3074.492 kb on - strand, within rrmA at 3074.674 kb on + strand, within rrmA at 3074.674 kb on + strand, within rrmA at 3074.700 kb on - strand, within rrmA at 3074.745 kb on + strand, within rrmA at 3075.139 kb on - strand at 3075.262 kb on + strand, within Shewana3_2571 at 3075.591 kb on + strand, within Shewana3_2571 at 3075.810 kb on + strand at 3075.811 kb on + strand at 3075.811 kb on + strand at 3075.819 kb on - strand at 3075.819 kb on - strand at 3075.828 kb on + strand at 3075.841 kb on - strand at 3075.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,073,473 + +0.2 3,073,497 - +2.5 3,074,282 + -1.5 3,074,492 - rrmA Shewana3_2570 0.33 -0.4 3,074,674 + rrmA Shewana3_2570 0.55 +1.5 3,074,674 + rrmA Shewana3_2570 0.55 -0.3 3,074,700 - rrmA Shewana3_2570 0.58 -0.5 3,074,745 + rrmA Shewana3_2570 0.64 +0.5 3,075,139 - +1.0 3,075,262 + Shewana3_2571 0.24 +0.5 3,075,591 + Shewana3_2571 0.64 -0.9 3,075,810 + +1.0 3,075,811 + +0.5 3,075,811 + -2.3 3,075,819 - +0.5 3,075,819 - +0.9 3,075,828 + +1.0 3,075,841 - +1.3 3,075,893 + +0.5
Or see this region's nucleotide sequence