Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpmF and Shewana3_2563 are separated by 17 nucleotides Shewana3_2563 and Shewana3_2564 are separated by 286 nucleotides Shewana3_2564 and Shewana3_2565 are separated by 160 nucleotides Shewana3_2565 and Shewana3_2566 are separated by 51 nucleotides
Shewana3_2562: rpmF - 50S ribosomal protein L32 (RefSeq), at 3,064,184 to 3,064,354
rpmF
Shewana3_2563: Shewana3_2563 - hypothetical protein (RefSeq), at 3,064,372 to 3,064,896
_2563
Shewana3_2564: Shewana3_2564 - maf protein (RefSeq), at 3,065,183 to 3,065,770
_2564
Shewana3_2565: Shewana3_2565 - HAD family hydrolase (RefSeq), at 3,065,931 to 3,066,665
_2565
Shewana3_2566: Shewana3_2566 - ribosomal large subunit pseudouridine synthase C (RefSeq), at 3,066,717 to 3,067,706
_2566
Position (kb)
3065
3066 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3065.041 kb on + strand at 3065.041 kb on + strand at 3065.069 kb on + strand at 3065.537 kb on + strand, within Shewana3_2564 at 3065.572 kb on + strand, within Shewana3_2564 at 3065.642 kb on + strand, within Shewana3_2564 at 3065.648 kb on + strand, within Shewana3_2564 at 3065.712 kb on + strand at 3065.720 kb on - strand at 3065.727 kb on + strand at 3065.770 kb on + strand at 3065.778 kb on - strand at 3065.830 kb on - strand at 3065.892 kb on - strand at 3066.031 kb on + strand, within Shewana3_2565 at 3066.065 kb on - strand, within Shewana3_2565 at 3066.156 kb on - strand, within Shewana3_2565 at 3066.222 kb on + strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.335 kb on + strand, within Shewana3_2565 at 3066.671 kb on - strand at 3066.671 kb on - strand at 3066.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,065,041 + +2.6 3,065,041 + +2.3 3,065,069 + +1.0 3,065,537 + Shewana3_2564 0.60 -2.6 3,065,572 + Shewana3_2564 0.66 -1.0 3,065,642 + Shewana3_2564 0.78 -1.3 3,065,648 + Shewana3_2564 0.79 +1.1 3,065,712 + -0.2 3,065,720 - +0.0 3,065,727 + -0.2 3,065,770 + +0.4 3,065,778 - -0.6 3,065,830 - -1.1 3,065,892 - +0.6 3,066,031 + Shewana3_2565 0.14 -1.5 3,066,065 - Shewana3_2565 0.18 +1.1 3,066,156 - Shewana3_2565 0.31 +0.5 3,066,222 + Shewana3_2565 0.40 +0.7 3,066,230 - Shewana3_2565 0.41 -0.9 3,066,230 - Shewana3_2565 0.41 +0.3 3,066,335 + Shewana3_2565 0.55 -1.9 3,066,671 - -0.2 3,066,671 - +1.0 3,066,693 - -0.0
Or see this region's nucleotide sequence