Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2552 and Shewana3_2553 are separated by 227 nucleotides Shewana3_2553 and Shewana3_2554 are separated by 94 nucleotides
Shewana3_2552: Shewana3_2552 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,053,218 to 3,055,008
_2552
Shewana3_2553: Shewana3_2553 - aldose 1-epimerase (RefSeq), at 3,055,236 to 3,056,084
_2553
Shewana3_2554: Shewana3_2554 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 3,056,179 to 3,057,054
_2554
Position (kb)
3055
3056
3057 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3054.261 kb on + strand, within Shewana3_2552 at 3054.352 kb on - strand, within Shewana3_2552 at 3054.600 kb on - strand, within Shewana3_2552 at 3054.626 kb on - strand, within Shewana3_2552 at 3054.707 kb on - strand, within Shewana3_2552 at 3054.708 kb on - strand, within Shewana3_2552 at 3054.727 kb on + strand, within Shewana3_2552 at 3054.825 kb on - strand, within Shewana3_2552 at 3054.846 kb on - strand at 3054.893 kb on - strand at 3055.056 kb on - strand at 3055.296 kb on + strand at 3055.444 kb on + strand, within Shewana3_2553 at 3055.484 kb on - strand, within Shewana3_2553 at 3055.518 kb on + strand, within Shewana3_2553 at 3055.654 kb on + strand, within Shewana3_2553 at 3055.685 kb on + strand, within Shewana3_2553 at 3055.862 kb on - strand, within Shewana3_2553 at 3055.915 kb on - strand, within Shewana3_2553 at 3056.500 kb on + strand, within Shewana3_2554 at 3056.500 kb on + strand, within Shewana3_2554 at 3056.508 kb on - strand, within Shewana3_2554 at 3056.558 kb on - strand, within Shewana3_2554 at 3056.613 kb on - strand, within Shewana3_2554 at 3056.938 kb on + strand, within Shewana3_2554 at 3056.941 kb on - strand, within Shewana3_2554 at 3056.962 kb on + strand, within Shewana3_2554 at 3056.962 kb on + strand, within Shewana3_2554 at 3056.970 kb on - strand at 3056.984 kb on - strand at 3056.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,054,261 + Shewana3_2552 0.58 +1.5 3,054,352 - Shewana3_2552 0.63 -0.4 3,054,600 - Shewana3_2552 0.77 -0.5 3,054,626 - Shewana3_2552 0.79 -1.2 3,054,707 - Shewana3_2552 0.83 -1.0 3,054,708 - Shewana3_2552 0.83 +1.0 3,054,727 + Shewana3_2552 0.84 +0.0 3,054,825 - Shewana3_2552 0.90 -0.5 3,054,846 - +1.3 3,054,893 - -1.5 3,055,056 - -0.3 3,055,296 + -0.3 3,055,444 + Shewana3_2553 0.24 -2.2 3,055,484 - Shewana3_2553 0.29 +1.5 3,055,518 + Shewana3_2553 0.33 +0.1 3,055,654 + Shewana3_2553 0.49 -0.6 3,055,685 + Shewana3_2553 0.53 -1.0 3,055,862 - Shewana3_2553 0.74 -0.8 3,055,915 - Shewana3_2553 0.80 -0.0 3,056,500 + Shewana3_2554 0.37 +0.5 3,056,500 + Shewana3_2554 0.37 +2.5 3,056,508 - Shewana3_2554 0.38 +1.7 3,056,558 - Shewana3_2554 0.43 +0.5 3,056,613 - Shewana3_2554 0.50 +1.3 3,056,938 + Shewana3_2554 0.87 -0.8 3,056,941 - Shewana3_2554 0.87 -1.9 3,056,962 + Shewana3_2554 0.89 +0.2 3,056,962 + Shewana3_2554 0.89 +0.6 3,056,970 - +0.5 3,056,984 - +0.8 3,056,984 - -0.7
Or see this region's nucleotide sequence