Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2532 and Shewana3_2533 are separated by 0 nucleotides Shewana3_2533 and Shewana3_2534 overlap by 1 nucleotides Shewana3_2534 and Shewana3_2535 overlap by 11 nucleotides Shewana3_2535 and Shewana3_2536 are separated by 170 nucleotides
Shewana3_2532: Shewana3_2532 - TolA family protein (RefSeq), at 3,028,872 to 3,029,894
_2532
Shewana3_2533: Shewana3_2533 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,029,895 to 3,030,329
_2533
Shewana3_2534: Shewana3_2534 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,030,329 to 3,031,015
_2534
Shewana3_2535: Shewana3_2535 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 3,031,005 to 3,031,406
_2535
Shewana3_2536: Shewana3_2536 - prolyl oligopeptidase (RefSeq), at 3,031,577 to 3,033,757
_2536
Position (kb)
3030
3031
3032 Strain fitness (log2 ratio)
-1
0
1 at 3031.033 kb on - strand at 3031.056 kb on - strand, within Shewana3_2535 at 3031.056 kb on - strand, within Shewana3_2535 at 3031.078 kb on - strand, within Shewana3_2535 at 3031.291 kb on - strand, within Shewana3_2535 at 3031.306 kb on + strand, within Shewana3_2535 at 3031.360 kb on - strand, within Shewana3_2535 at 3031.378 kb on - strand at 3031.644 kb on - strand at 3031.689 kb on + strand at 3031.895 kb on + strand, within Shewana3_2536 at 3031.995 kb on - strand, within Shewana3_2536
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,031,033 - +0.6 3,031,056 - Shewana3_2535 0.13 -1.3 3,031,056 - Shewana3_2535 0.13 -0.1 3,031,078 - Shewana3_2535 0.18 -0.3 3,031,291 - Shewana3_2535 0.71 -0.0 3,031,306 + Shewana3_2535 0.75 +1.0 3,031,360 - Shewana3_2535 0.88 +0.3 3,031,378 - -0.9 3,031,644 - +1.0 3,031,689 + +0.1 3,031,895 + Shewana3_2536 0.15 -0.7 3,031,995 - Shewana3_2536 0.19 +1.1
Or see this region's nucleotide sequence