Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2533

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2532 and Shewana3_2533 are separated by 0 nucleotidesShewana3_2533 and Shewana3_2534 overlap by 1 nucleotidesShewana3_2534 and Shewana3_2535 overlap by 11 nucleotides Shewana3_2532: Shewana3_2532 - TolA family protein (RefSeq), at 3,028,872 to 3,029,894 _2532 Shewana3_2533: Shewana3_2533 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,029,895 to 3,030,329 _2533 Shewana3_2534: Shewana3_2534 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,030,329 to 3,031,015 _2534 Shewana3_2535: Shewana3_2535 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 3,031,005 to 3,031,406 _2535 Position (kb) 3029 3030 3031Strain fitness (log2 ratio) -1 0 1at 3031.033 kb on - strandat 3031.056 kb on - strand, within Shewana3_2535at 3031.056 kb on - strand, within Shewana3_2535at 3031.078 kb on - strand, within Shewana3_2535at 3031.291 kb on - strand, within Shewana3_2535at 3031.306 kb on + strand, within Shewana3_2535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,031,033 - +0.6
3,031,056 - Shewana3_2535 0.13 -1.3
3,031,056 - Shewana3_2535 0.13 -0.1
3,031,078 - Shewana3_2535 0.18 -0.3
3,031,291 - Shewana3_2535 0.71 -0.0
3,031,306 + Shewana3_2535 0.75 +1.0

Or see this region's nucleotide sequence