Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2523 and Shewana3_2524 are separated by 226 nucleotides Shewana3_2524 and grxA are separated by 60 nucleotides grxA and Shewana3_2526 are separated by 58 nucleotides
Shewana3_2523: Shewana3_2523 - acetyl-CoA synthetase (RefSeq), at 3,019,358 to 3,021,310
_2523
Shewana3_2524: Shewana3_2524 - type III restriction enzyme, res subunit (RefSeq), at 3,021,537 to 3,023,309
_2524
Shewana3_2525: grxA - glutaredoxin 1 (RefSeq), at 3,023,370 to 3,023,630
grxA
Shewana3_2526: Shewana3_2526 - hypothetical protein (RefSeq), at 3,023,689 to 3,024,852
_2526
Position (kb)
3021
3022
3023
3024 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3020.738 kb on - strand, within Shewana3_2523 at 3020.838 kb on + strand, within Shewana3_2523 at 3021.004 kb on - strand, within Shewana3_2523 at 3021.060 kb on + strand, within Shewana3_2523 at 3021.068 kb on - strand, within Shewana3_2523 at 3021.166 kb on - strand at 3021.354 kb on + strand at 3021.354 kb on + strand at 3021.498 kb on - strand at 3021.498 kb on - strand at 3021.498 kb on - strand at 3021.644 kb on - strand at 3021.722 kb on - strand, within Shewana3_2524 at 3021.961 kb on + strand, within Shewana3_2524 at 3022.348 kb on - strand, within Shewana3_2524 at 3022.585 kb on + strand, within Shewana3_2524 at 3022.864 kb on - strand, within Shewana3_2524 at 3022.878 kb on + strand, within Shewana3_2524 at 3023.198 kb on - strand at 3023.335 kb on - strand at 3023.755 kb on + strand at 3023.775 kb on - strand at 3023.855 kb on - strand, within Shewana3_2526 at 3023.893 kb on + strand, within Shewana3_2526 at 3023.895 kb on + strand, within Shewana3_2526 at 3024.256 kb on + strand, within Shewana3_2526
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,020,738 - Shewana3_2523 0.71 -1.3 3,020,838 + Shewana3_2523 0.76 -0.3 3,021,004 - Shewana3_2523 0.84 +0.2 3,021,060 + Shewana3_2523 0.87 +0.4 3,021,068 - Shewana3_2523 0.88 +1.6 3,021,166 - +1.0 3,021,354 + -3.3 3,021,354 + -2.3 3,021,498 - -0.4 3,021,498 - +0.0 3,021,498 - +0.3 3,021,644 - -1.3 3,021,722 - Shewana3_2524 0.10 +0.6 3,021,961 + Shewana3_2524 0.24 -0.4 3,022,348 - Shewana3_2524 0.46 -1.0 3,022,585 + Shewana3_2524 0.59 +2.6 3,022,864 - Shewana3_2524 0.75 +1.0 3,022,878 + Shewana3_2524 0.76 +0.0 3,023,198 - +0.3 3,023,335 - -0.2 3,023,755 + +1.0 3,023,775 - +0.0 3,023,855 - Shewana3_2526 0.14 +0.3 3,023,893 + Shewana3_2526 0.18 +0.6 3,023,895 + Shewana3_2526 0.18 +0.6 3,024,256 + Shewana3_2526 0.49 +1.0
Or see this region's nucleotide sequence