Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2483 and Shewana3_2484 are separated by 183 nucleotides Shewana3_2484 and Shewana3_2485 are separated by 323 nucleotides
Shewana3_2483: Shewana3_2483 - diguanylate cyclase (RefSeq), at 2,969,437 to 2,970,840
_2483
Shewana3_2484: Shewana3_2484 - hexapaptide repeat-containing transferase (RefSeq), at 2,971,024 to 2,971,581
_2484
Shewana3_2485: Shewana3_2485 - lysine exporter protein LysE/YggA (RefSeq), at 2,971,905 to 2,972,528
_2485
Position (kb)
2971
2972 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2970.067 kb on + strand, within Shewana3_2483 at 2970.094 kb on - strand, within Shewana3_2483 at 2970.115 kb on - strand, within Shewana3_2483 at 2970.146 kb on - strand, within Shewana3_2483 at 2970.276 kb on - strand, within Shewana3_2483 at 2970.286 kb on + strand, within Shewana3_2483 at 2970.381 kb on - strand, within Shewana3_2483 at 2970.490 kb on - strand, within Shewana3_2483 at 2970.653 kb on - strand, within Shewana3_2483 at 2970.779 kb on + strand at 2970.797 kb on - strand at 2970.852 kb on + strand at 2971.061 kb on - strand at 2971.272 kb on - strand, within Shewana3_2484 at 2971.323 kb on + strand, within Shewana3_2484 at 2971.407 kb on - strand, within Shewana3_2484 at 2971.409 kb on + strand, within Shewana3_2484 at 2971.758 kb on - strand at 2971.768 kb on + strand at 2971.787 kb on - strand at 2971.904 kb on - strand at 2971.904 kb on - strand at 2971.937 kb on - strand at 2971.973 kb on + strand, within Shewana3_2485 at 2972.025 kb on - strand, within Shewana3_2485 at 2972.103 kb on - strand, within Shewana3_2485 at 2972.113 kb on - strand, within Shewana3_2485 at 2972.113 kb on - strand, within Shewana3_2485 at 2972.282 kb on + strand, within Shewana3_2485 at 2972.282 kb on + strand, within Shewana3_2485 at 2972.290 kb on - strand, within Shewana3_2485
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,970,067 + Shewana3_2483 0.45 -0.8 2,970,094 - Shewana3_2483 0.47 -0.8 2,970,115 - Shewana3_2483 0.48 +1.9 2,970,146 - Shewana3_2483 0.50 -0.4 2,970,276 - Shewana3_2483 0.60 -0.7 2,970,286 + Shewana3_2483 0.60 +0.1 2,970,381 - Shewana3_2483 0.67 -1.6 2,970,490 - Shewana3_2483 0.75 +0.0 2,970,653 - Shewana3_2483 0.87 +0.8 2,970,779 + +0.1 2,970,797 - +0.7 2,970,852 + -0.8 2,971,061 - -1.3 2,971,272 - Shewana3_2484 0.44 -0.2 2,971,323 + Shewana3_2484 0.54 +2.1 2,971,407 - Shewana3_2484 0.69 -1.9 2,971,409 + Shewana3_2484 0.69 +0.3 2,971,758 - +0.8 2,971,768 + +1.1 2,971,787 - +0.4 2,971,904 - +1.7 2,971,904 - -1.8 2,971,937 - -0.0 2,971,973 + Shewana3_2485 0.11 -0.6 2,972,025 - Shewana3_2485 0.19 +0.1 2,972,103 - Shewana3_2485 0.32 -1.9 2,972,113 - Shewana3_2485 0.33 -0.3 2,972,113 - Shewana3_2485 0.33 -1.0 2,972,282 + Shewana3_2485 0.60 +1.0 2,972,282 + Shewana3_2485 0.60 +1.2 2,972,290 - Shewana3_2485 0.62 +2.7
Or see this region's nucleotide sequence