Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2480 and Shewana3_2481 are separated by 214 nucleotides Shewana3_2481 and Shewana3_2482 are separated by 113 nucleotides
Shewana3_2480: Shewana3_2480 - LysR family transcriptional regulator (RefSeq), at 2,965,797 to 2,966,711
_2480
Shewana3_2481: Shewana3_2481 - homogentisate 1,2-dioxygenase (RefSeq), at 2,966,926 to 2,968,086
_2481
Shewana3_2482: Shewana3_2482 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,968,200 to 2,969,240
_2482
Position (kb)
2966
2967
2968
2969 Strain fitness (log2 ratio)
-2
-1
0
1 at 2966.017 kb on - strand, within Shewana3_2480 at 2966.282 kb on - strand, within Shewana3_2480 at 2966.289 kb on - strand, within Shewana3_2480 at 2966.575 kb on + strand, within Shewana3_2480 at 2967.123 kb on - strand, within Shewana3_2481 at 2967.365 kb on + strand, within Shewana3_2481 at 2967.391 kb on - strand, within Shewana3_2481 at 2967.614 kb on + strand, within Shewana3_2481 at 2967.636 kb on - strand, within Shewana3_2481 at 2967.658 kb on + strand, within Shewana3_2481 at 2967.750 kb on + strand, within Shewana3_2481 at 2967.752 kb on + strand, within Shewana3_2481 at 2967.760 kb on - strand, within Shewana3_2481 at 2967.852 kb on + strand, within Shewana3_2481 at 2967.860 kb on - strand, within Shewana3_2481 at 2968.154 kb on + strand at 2968.482 kb on + strand, within Shewana3_2482 at 2968.526 kb on + strand, within Shewana3_2482 at 2968.534 kb on - strand, within Shewana3_2482 at 2968.548 kb on + strand, within Shewana3_2482 at 2968.800 kb on - strand, within Shewana3_2482 at 2968.802 kb on + strand, within Shewana3_2482 at 2968.842 kb on + strand, within Shewana3_2482 at 2968.859 kb on + strand, within Shewana3_2482 at 2969.055 kb on - strand, within Shewana3_2482
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,966,017 - Shewana3_2480 0.24 +1.0 2,966,282 - Shewana3_2480 0.53 +1.0 2,966,289 - Shewana3_2480 0.54 +0.4 2,966,575 + Shewana3_2480 0.85 -2.2 2,967,123 - Shewana3_2481 0.17 -0.9 2,967,365 + Shewana3_2481 0.38 -0.2 2,967,391 - Shewana3_2481 0.40 +1.7 2,967,614 + Shewana3_2481 0.59 +0.5 2,967,636 - Shewana3_2481 0.61 -0.1 2,967,658 + Shewana3_2481 0.63 +0.7 2,967,750 + Shewana3_2481 0.71 +0.5 2,967,752 + Shewana3_2481 0.71 +0.4 2,967,760 - Shewana3_2481 0.72 +0.2 2,967,852 + Shewana3_2481 0.80 +1.2 2,967,860 - Shewana3_2481 0.80 -0.1 2,968,154 + -0.2 2,968,482 + Shewana3_2482 0.27 -0.5 2,968,526 + Shewana3_2482 0.31 -0.8 2,968,534 - Shewana3_2482 0.32 -0.4 2,968,548 + Shewana3_2482 0.33 -0.8 2,968,800 - Shewana3_2482 0.58 +0.6 2,968,802 + Shewana3_2482 0.58 +0.2 2,968,842 + Shewana3_2482 0.62 -0.5 2,968,859 + Shewana3_2482 0.63 +0.7 2,969,055 - Shewana3_2482 0.82 +0.5
Or see this region's nucleotide sequence