Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2472

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2470 and Shewana3_2471 are separated by 62 nucleotidesShewana3_2471 and Shewana3_2472 overlap by 1 nucleotidesShewana3_2472 and Shewana3_2473 are separated by 106 nucleotides Shewana3_2470: Shewana3_2470 - hypothetical protein (RefSeq), at 2,957,393 to 2,957,800 _2470 Shewana3_2471: Shewana3_2471 - alpha/beta fold family hydrolase (RefSeq), at 2,957,863 to 2,958,732 _2471 Shewana3_2472: Shewana3_2472 - oxoglutarate dehydrogenase (succinyl-transferring) (RefSeq), at 2,958,732 to 2,959,757 _2472 Shewana3_2473: Shewana3_2473 - succinate dehydrogenase (ubiquinone) (RefSeq), at 2,959,864 to 2,960,595 _2473 Position (kb) 2958 2959 2960Strain fitness (log2 ratio) -1 0 1at 2957.779 kb on + strandat 2957.868 kb on - strandat 2957.918 kb on - strandat 2957.994 kb on - strand, within Shewana3_2471at 2958.142 kb on - strand, within Shewana3_2471at 2958.332 kb on + strand, within Shewana3_2471at 2958.665 kb on - strandat 2958.843 kb on + strand, within Shewana3_2472at 2959.183 kb on - strand, within Shewana3_2472at 2959.226 kb on + strand, within Shewana3_2472at 2959.459 kb on - strand, within Shewana3_2472at 2959.840 kb on + strandat 2960.210 kb on + strand, within Shewana3_2473at 2960.250 kb on - strand, within Shewana3_2473at 2960.611 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,957,779 + -0.1
2,957,868 - +0.1
2,957,918 - -0.5
2,957,994 - Shewana3_2471 0.15 -0.5
2,958,142 - Shewana3_2471 0.32 +0.1
2,958,332 + Shewana3_2471 0.54 +0.5
2,958,665 - -1.4
2,958,843 + Shewana3_2472 0.11 -0.8
2,959,183 - Shewana3_2472 0.44 +1.1
2,959,226 + Shewana3_2472 0.48 +0.1
2,959,459 - Shewana3_2472 0.71 -1.5
2,959,840 + +1.1
2,960,210 + Shewana3_2473 0.47 +0.1
2,960,250 - Shewana3_2473 0.53 +0.3
2,960,611 + -1.6

Or see this region's nucleotide sequence