Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2443 and recR are separated by 317 nucleotides recR and Shewana3_2445 are separated by 12 nucleotides Shewana3_2445 and Shewana3_2446 are separated by 163 nucleotides
Shewana3_2443: Shewana3_2443 - heat shock protein 90 (RefSeq), at 2,929,409 to 2,931,322
_2443
Shewana3_2444: recR - recombination protein RecR (RefSeq), at 2,931,640 to 2,932,239
recR
Shewana3_2445: Shewana3_2445 - hypothetical protein (RefSeq), at 2,932,252 to 2,932,587
_2445
Shewana3_2446: Shewana3_2446 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,932,751 to 2,935,873
_2446
Position (kb)
2932
2933 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2931.491 kb on + strand at 2931.534 kb on + strand at 2931.548 kb on + strand at 2931.548 kb on + strand at 2931.556 kb on - strand at 2931.667 kb on - strand at 2931.669 kb on + strand at 2931.669 kb on + strand at 2931.672 kb on - strand at 2931.677 kb on - strand at 2931.784 kb on + strand, within recR at 2931.876 kb on - strand, within recR at 2931.884 kb on - strand, within recR at 2931.884 kb on - strand, within recR at 2931.884 kb on - strand, within recR at 2932.062 kb on - strand, within recR at 2932.099 kb on - strand, within recR at 2932.099 kb on - strand, within recR at 2932.206 kb on + strand at 2932.356 kb on - strand, within Shewana3_2445 at 2932.623 kb on - strand at 2932.623 kb on - strand at 2932.731 kb on + strand at 2932.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,931,491 + -0.5 2,931,534 + -0.5 2,931,548 + +0.3 2,931,548 + -0.1 2,931,556 - +0.7 2,931,667 - +0.3 2,931,669 + +1.7 2,931,669 + +0.1 2,931,672 - +0.2 2,931,677 - -0.6 2,931,784 + recR Shewana3_2444 0.24 +1.1 2,931,876 - recR Shewana3_2444 0.39 -0.4 2,931,884 - recR Shewana3_2444 0.41 +0.2 2,931,884 - recR Shewana3_2444 0.41 -0.8 2,931,884 - recR Shewana3_2444 0.41 -1.2 2,932,062 - recR Shewana3_2444 0.70 +0.6 2,932,099 - recR Shewana3_2444 0.77 -2.6 2,932,099 - recR Shewana3_2444 0.77 -0.7 2,932,206 + +2.7 2,932,356 - Shewana3_2445 0.31 +2.3 2,932,623 - +1.7 2,932,623 - +1.7 2,932,731 + -1.9 2,932,758 + -0.5
Or see this region's nucleotide sequence