Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemH and adk are separated by 79 nucleotides adk and Shewana3_2442 are separated by 141 nucleotides Shewana3_2442 and Shewana3_2443 are separated by 117 nucleotides
Shewana3_2440: hemH - ferrochelatase (RefSeq), at 2,926,516 to 2,927,562
hemH
Shewana3_2441: adk - adenylate kinase (RefSeq), at 2,927,642 to 2,928,286
adk
Shewana3_2442: Shewana3_2442 - thioredoxin domain-containing protein (RefSeq), at 2,928,428 to 2,929,291
_2442
Shewana3_2443: Shewana3_2443 - heat shock protein 90 (RefSeq), at 2,929,409 to 2,931,322
_2443
Position (kb)
2928
2929
2930 Strain fitness (log2 ratio)
-1
0
1
2 at 2928.434 kb on + strand at 2928.561 kb on + strand, within Shewana3_2442 at 2928.571 kb on - strand, within Shewana3_2442 at 2928.792 kb on + strand, within Shewana3_2442 at 2928.914 kb on + strand, within Shewana3_2442 at 2929.185 kb on - strand, within Shewana3_2442 at 2929.378 kb on + strand at 2929.483 kb on - strand at 2930.030 kb on - strand, within Shewana3_2443
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,928,434 + +1.1 2,928,561 + Shewana3_2442 0.15 -0.5 2,928,571 - Shewana3_2442 0.17 +1.9 2,928,792 + Shewana3_2442 0.42 +1.1 2,928,914 + Shewana3_2442 0.56 +0.3 2,929,185 - Shewana3_2442 0.88 +1.2 2,929,378 + +1.1 2,929,483 - +2.6 2,930,030 - Shewana3_2443 0.32 +2.7
Or see this region's nucleotide sequence