Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2426

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2425 and Shewana3_2426 are separated by 138 nucleotidesShewana3_2426 and Shewana3_2427 are separated by 77 nucleotidesShewana3_2427 and Shewana3_2428 are separated by 66 nucleotides Shewana3_2425: Shewana3_2425 - di-haem cytochrome c peroxidase (RefSeq), at 2,907,852 to 2,908,853 _2425 Shewana3_2426: Shewana3_2426 - nucleoid-associated protein NdpA (RefSeq), at 2,908,992 to 2,910,020 _2426 Shewana3_2427: Shewana3_2427 - hypothetical protein (RefSeq), at 2,910,098 to 2,910,316 _2427 Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173 _2428 Position (kb) 2908 2909 2910 2911Strain fitness (log2 ratio) -1 0 1 2at 2908.123 kb on - strand, within Shewana3_2425at 2908.180 kb on + strand, within Shewana3_2425at 2908.292 kb on + strand, within Shewana3_2425at 2908.420 kb on - strand, within Shewana3_2425at 2908.537 kb on + strand, within Shewana3_2425at 2908.537 kb on + strand, within Shewana3_2425at 2908.546 kb on - strand, within Shewana3_2425at 2908.548 kb on + strand, within Shewana3_2425at 2908.613 kb on + strand, within Shewana3_2425at 2909.156 kb on + strand, within Shewana3_2426at 2909.329 kb on - strand, within Shewana3_2426at 2909.384 kb on - strand, within Shewana3_2426at 2909.424 kb on - strand, within Shewana3_2426at 2909.821 kb on + strand, within Shewana3_2426at 2909.884 kb on + strand, within Shewana3_2426at 2909.907 kb on + strand, within Shewana3_2426at 2910.054 kb on + strandat 2910.669 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,908,123 - Shewana3_2425 0.27 -0.1
2,908,180 + Shewana3_2425 0.33 -1.1
2,908,292 + Shewana3_2425 0.44 +1.7
2,908,420 - Shewana3_2425 0.57 -1.2
2,908,537 + Shewana3_2425 0.68 -0.3
2,908,537 + Shewana3_2425 0.68 +1.0
2,908,546 - Shewana3_2425 0.69 -1.0
2,908,548 + Shewana3_2425 0.69 +0.2
2,908,613 + Shewana3_2425 0.76 +0.8
2,909,156 + Shewana3_2426 0.16 +2.7
2,909,329 - Shewana3_2426 0.33 +0.3
2,909,384 - Shewana3_2426 0.38 +2.0
2,909,424 - Shewana3_2426 0.42 +1.4
2,909,821 + Shewana3_2426 0.81 +0.3
2,909,884 + Shewana3_2426 0.87 -0.2
2,909,907 + Shewana3_2426 0.89 +0.1
2,910,054 + +0.2
2,910,669 + +2.7

Or see this region's nucleotide sequence