Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2425 and Shewana3_2426 are separated by 138 nucleotides Shewana3_2426 and Shewana3_2427 are separated by 77 nucleotides Shewana3_2427 and Shewana3_2428 are separated by 66 nucleotides
Shewana3_2425: Shewana3_2425 - di-haem cytochrome c peroxidase (RefSeq), at 2,907,852 to 2,908,853
_2425
Shewana3_2426: Shewana3_2426 - nucleoid-associated protein NdpA (RefSeq), at 2,908,992 to 2,910,020
_2426
Shewana3_2427: Shewana3_2427 - hypothetical protein (RefSeq), at 2,910,098 to 2,910,316
_2427
Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173
_2428
Position (kb)
2908
2909
2910
2911 Strain fitness (log2 ratio)
-1
0
1
2 at 2908.123 kb on - strand, within Shewana3_2425 at 2908.180 kb on + strand, within Shewana3_2425 at 2908.292 kb on + strand, within Shewana3_2425 at 2908.420 kb on - strand, within Shewana3_2425 at 2908.537 kb on + strand, within Shewana3_2425 at 2908.537 kb on + strand, within Shewana3_2425 at 2908.546 kb on - strand, within Shewana3_2425 at 2908.548 kb on + strand, within Shewana3_2425 at 2908.613 kb on + strand, within Shewana3_2425 at 2909.156 kb on + strand, within Shewana3_2426 at 2909.329 kb on - strand, within Shewana3_2426 at 2909.384 kb on - strand, within Shewana3_2426 at 2909.424 kb on - strand, within Shewana3_2426 at 2909.821 kb on + strand, within Shewana3_2426 at 2909.884 kb on + strand, within Shewana3_2426 at 2909.907 kb on + strand, within Shewana3_2426 at 2910.054 kb on + strand at 2910.669 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,908,123 - Shewana3_2425 0.27 -0.1 2,908,180 + Shewana3_2425 0.33 -1.1 2,908,292 + Shewana3_2425 0.44 +1.7 2,908,420 - Shewana3_2425 0.57 -1.2 2,908,537 + Shewana3_2425 0.68 -0.3 2,908,537 + Shewana3_2425 0.68 +1.0 2,908,546 - Shewana3_2425 0.69 -1.0 2,908,548 + Shewana3_2425 0.69 +0.2 2,908,613 + Shewana3_2425 0.76 +0.8 2,909,156 + Shewana3_2426 0.16 +2.7 2,909,329 - Shewana3_2426 0.33 +0.3 2,909,384 - Shewana3_2426 0.38 +2.0 2,909,424 - Shewana3_2426 0.42 +1.4 2,909,821 + Shewana3_2426 0.81 +0.3 2,909,884 + Shewana3_2426 0.87 -0.2 2,909,907 + Shewana3_2426 0.89 +0.1 2,910,054 + +0.2 2,910,669 + +2.7
Or see this region's nucleotide sequence