Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2423 and Shewana3_2424 are separated by 66 nucleotides Shewana3_2424 and Shewana3_2425 are separated by 580 nucleotides
Shewana3_2423: Shewana3_2423 - peptidase M23B (RefSeq), at 2,905,409 to 2,906,329
_2423
Shewana3_2424: Shewana3_2424 - isocitrate dehydrogenase (NADP(+)) (RefSeq), at 2,906,396 to 2,907,271
_2424
Shewana3_2425: Shewana3_2425 - di-haem cytochrome c peroxidase (RefSeq), at 2,907,852 to 2,908,853
_2425
Position (kb)
2906
2907
2908 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2905.641 kb on + strand, within Shewana3_2423 at 2905.660 kb on + strand, within Shewana3_2423 at 2905.915 kb on - strand, within Shewana3_2423 at 2906.004 kb on - strand, within Shewana3_2423 at 2906.230 kb on - strand, within Shewana3_2423 at 2906.657 kb on + strand, within Shewana3_2424 at 2906.770 kb on - strand, within Shewana3_2424 at 2906.863 kb on + strand, within Shewana3_2424 at 2906.892 kb on + strand, within Shewana3_2424 at 2906.966 kb on + strand, within Shewana3_2424 at 2906.995 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.109 kb on + strand, within Shewana3_2424 at 2907.165 kb on - strand, within Shewana3_2424 at 2907.342 kb on + strand at 2907.406 kb on - strand at 2907.595 kb on - strand at 2907.636 kb on + strand at 2907.888 kb on - strand at 2908.123 kb on - strand, within Shewana3_2425 at 2908.180 kb on + strand, within Shewana3_2425
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,905,641 + Shewana3_2423 0.25 -0.9 2,905,660 + Shewana3_2423 0.27 +1.7 2,905,915 - Shewana3_2423 0.55 +0.8 2,906,004 - Shewana3_2423 0.65 -2.1 2,906,230 - Shewana3_2423 0.89 +1.2 2,906,657 + Shewana3_2424 0.30 +2.7 2,906,770 - Shewana3_2424 0.43 +1.9 2,906,863 + Shewana3_2424 0.53 +1.1 2,906,892 + Shewana3_2424 0.57 +2.7 2,906,966 + Shewana3_2424 0.65 +2.7 2,906,995 - Shewana3_2424 0.68 -0.1 2,907,016 - Shewana3_2424 0.71 +1.7 2,907,016 - Shewana3_2424 0.71 +0.2 2,907,109 + Shewana3_2424 0.81 +1.7 2,907,165 - Shewana3_2424 0.88 +0.3 2,907,342 + +1.7 2,907,406 - -0.6 2,907,595 - -0.3 2,907,636 + +0.1 2,907,888 - -0.0 2,908,123 - Shewana3_2425 0.27 -0.1 2,908,180 + Shewana3_2425 0.33 -1.1
Or see this region's nucleotide sequence