Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2399 and Shewana3_2400 are separated by 20 nucleotides Shewana3_2400 and Shewana3_2401 are separated by 101 nucleotides
Shewana3_2399: Shewana3_2399 - protein tyrosine phosphatase (RefSeq), at 2,878,032 to 2,878,547
_2399
Shewana3_2400: Shewana3_2400 - hypothetical protein (RefSeq), at 2,878,568 to 2,879,590
_2400
Shewana3_2401: Shewana3_2401 - DNA ligase (RefSeq), at 2,879,692 to 2,880,606
_2401
Position (kb)
2878
2879
2880 Strain fitness (log2 ratio)
-1
0
1
2 at 2877.833 kb on + strand at 2877.963 kb on + strand at 2878.143 kb on - strand, within Shewana3_2399 at 2878.182 kb on - strand, within Shewana3_2399 at 2878.348 kb on + strand, within Shewana3_2399 at 2878.356 kb on - strand, within Shewana3_2399 at 2878.484 kb on - strand, within Shewana3_2399 at 2878.578 kb on - strand at 2878.643 kb on - strand at 2879.019 kb on - strand, within Shewana3_2400 at 2879.157 kb on - strand, within Shewana3_2400 at 2879.340 kb on + strand, within Shewana3_2400 at 2879.452 kb on + strand, within Shewana3_2400 at 2879.470 kb on + strand, within Shewana3_2400 at 2880.003 kb on - strand, within Shewana3_2401 at 2880.026 kb on - strand, within Shewana3_2401 at 2880.034 kb on + strand, within Shewana3_2401 at 2880.042 kb on - strand, within Shewana3_2401 at 2880.189 kb on - strand, within Shewana3_2401 at 2880.355 kb on - strand, within Shewana3_2401
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,877,833 + -1.1 2,877,963 + +1.7 2,878,143 - Shewana3_2399 0.22 +0.7 2,878,182 - Shewana3_2399 0.29 -1.5 2,878,348 + Shewana3_2399 0.61 -0.1 2,878,356 - Shewana3_2399 0.63 +0.8 2,878,484 - Shewana3_2399 0.88 +1.3 2,878,578 - +0.6 2,878,643 - +0.1 2,879,019 - Shewana3_2400 0.44 -1.6 2,879,157 - Shewana3_2400 0.58 +0.1 2,879,340 + Shewana3_2400 0.75 -0.1 2,879,452 + Shewana3_2400 0.86 -0.3 2,879,470 + Shewana3_2400 0.88 +2.7 2,880,003 - Shewana3_2401 0.34 +0.1 2,880,026 - Shewana3_2401 0.37 -1.4 2,880,034 + Shewana3_2401 0.37 -0.3 2,880,042 - Shewana3_2401 0.38 +0.9 2,880,189 - Shewana3_2401 0.54 +0.0 2,880,355 - Shewana3_2401 0.72 -0.1
Or see this region's nucleotide sequence