Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2393 and Shewana3_2394 are separated by 377 nucleotides Shewana3_2394 and rbgA are separated by 136 nucleotides
Shewana3_2393: Shewana3_2393 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 2,871,948 to 2,872,853
_2393
Shewana3_2394: Shewana3_2394 - 2OG-Fe(II) oxygenase (RefSeq), at 2,873,231 to 2,874,070
_2394
Shewana3_2395: rbgA - ribosomal biogenesis GTPase (RefSeq), at 2,874,207 to 2,875,148
rbgA
Position (kb)
2873
2874
2875 Strain fitness (log2 ratio)
-2
-1
0
1 at 2872.416 kb on - strand, within Shewana3_2393 at 2872.462 kb on - strand, within Shewana3_2393 at 2872.614 kb on - strand, within Shewana3_2393 at 2872.774 kb on + strand at 2872.929 kb on + strand at 2873.040 kb on + strand at 2873.058 kb on + strand at 2873.129 kb on + strand at 2873.136 kb on - strand at 2873.176 kb on + strand at 2873.269 kb on - strand at 2873.342 kb on - strand, within Shewana3_2394 at 2873.361 kb on - strand, within Shewana3_2394 at 2873.472 kb on + strand, within Shewana3_2394 at 2873.499 kb on - strand, within Shewana3_2394 at 2873.700 kb on - strand, within Shewana3_2394 at 2873.753 kb on + strand, within Shewana3_2394 at 2873.769 kb on - strand, within Shewana3_2394 at 2873.790 kb on + strand, within Shewana3_2394 at 2873.810 kb on + strand, within Shewana3_2394
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,872,416 - Shewana3_2393 0.52 +0.8 2,872,462 - Shewana3_2393 0.57 +1.2 2,872,614 - Shewana3_2393 0.74 +1.2 2,872,774 + -1.7 2,872,929 + +0.3 2,873,040 + +1.0 2,873,058 + +0.0 2,873,129 + -0.3 2,873,136 - +0.7 2,873,176 + -1.4 2,873,269 - -2.6 2,873,342 - Shewana3_2394 0.13 -0.5 2,873,361 - Shewana3_2394 0.15 -0.6 2,873,472 + Shewana3_2394 0.29 -1.7 2,873,499 - Shewana3_2394 0.32 +0.5 2,873,700 - Shewana3_2394 0.56 +1.1 2,873,753 + Shewana3_2394 0.62 +1.7 2,873,769 - Shewana3_2394 0.64 -1.1 2,873,790 + Shewana3_2394 0.67 +1.1 2,873,810 + Shewana3_2394 0.69 +1.6
Or see this region's nucleotide sequence