Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2385 and Shewana3_2386 are separated by 14 nucleotides Shewana3_2386 and Shewana3_2387 are separated by 199 nucleotides
Shewana3_2385: Shewana3_2385 - ribonuclease D (RefSeq), at 2,863,731 to 2,864,897
_2385
Shewana3_2386: Shewana3_2386 - long-chain-fatty-acid--CoA ligase (RefSeq), at 2,864,912 to 2,866,585
_2386
Shewana3_2387: Shewana3_2387 - alpha/beta hydrolase fold (RefSeq), at 2,866,785 to 2,867,651
_2387
Position (kb)
2864
2865
2866
2867 Strain fitness (log2 ratio)
-1
0
1
2 at 2864.253 kb on - strand, within Shewana3_2385 at 2864.386 kb on + strand, within Shewana3_2385 at 2864.388 kb on + strand, within Shewana3_2385 at 2864.487 kb on + strand, within Shewana3_2385 at 2864.495 kb on - strand, within Shewana3_2385 at 2864.550 kb on - strand, within Shewana3_2385 at 2864.635 kb on + strand, within Shewana3_2385 at 2864.687 kb on - strand, within Shewana3_2385 at 2864.717 kb on + strand, within Shewana3_2385 at 2864.870 kb on - strand at 2865.400 kb on - strand, within Shewana3_2386 at 2865.875 kb on - strand, within Shewana3_2386 at 2866.198 kb on - strand, within Shewana3_2386 at 2866.268 kb on - strand, within Shewana3_2386 at 2866.849 kb on - strand at 2866.865 kb on + strand at 2866.873 kb on - strand, within Shewana3_2387 at 2867.309 kb on - strand, within Shewana3_2387
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,864,253 - Shewana3_2385 0.45 -1.0 2,864,386 + Shewana3_2385 0.56 +2.7 2,864,388 + Shewana3_2385 0.56 +0.7 2,864,487 + Shewana3_2385 0.65 +1.1 2,864,495 - Shewana3_2385 0.65 +0.7 2,864,550 - Shewana3_2385 0.70 -0.8 2,864,635 + Shewana3_2385 0.77 +1.7 2,864,687 - Shewana3_2385 0.82 +0.2 2,864,717 + Shewana3_2385 0.84 -0.1 2,864,870 - -0.7 2,865,400 - Shewana3_2386 0.29 +1.9 2,865,875 - Shewana3_2386 0.58 -0.5 2,866,198 - Shewana3_2386 0.77 -1.4 2,866,268 - Shewana3_2386 0.81 +0.4 2,866,849 - -0.3 2,866,865 + +0.1 2,866,873 - Shewana3_2387 0.10 -0.8 2,867,309 - Shewana3_2387 0.60 -0.1
Or see this region's nucleotide sequence