Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2370 and Shewana3_2371 are separated by 263 nucleotides Shewana3_2371 and Shewana3_2372 are separated by 2 nucleotides
Shewana3_2370: Shewana3_2370 - MltD domain-containing protein (RefSeq), at 2,848,212 to 2,849,759
_2370
Shewana3_2371: Shewana3_2371 - intracellular proteinase inhibitor domain-containing protein (RefSeq), at 2,850,023 to 2,850,682
_2371
Shewana3_2372: Shewana3_2372 - AsmA protein (RefSeq), at 2,850,685 to 2,852,505
_2372
Position (kb)
2850
2851 Strain fitness (log2 ratio)
-1
0
1
2 at 2849.058 kb on - strand, within Shewana3_2370 at 2849.475 kb on - strand, within Shewana3_2370 at 2849.769 kb on - strand at 2849.804 kb on + strand at 2850.048 kb on - strand at 2850.202 kb on + strand, within Shewana3_2371 at 2850.385 kb on + strand, within Shewana3_2371 at 2850.554 kb on - strand, within Shewana3_2371 at 2850.737 kb on - strand at 2850.873 kb on - strand, within Shewana3_2372 at 2850.894 kb on - strand, within Shewana3_2372 at 2850.948 kb on - strand, within Shewana3_2372 at 2851.053 kb on + strand, within Shewana3_2372 at 2851.098 kb on - strand, within Shewana3_2372 at 2851.438 kb on + strand, within Shewana3_2372 at 2851.486 kb on - strand, within Shewana3_2372
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,849,058 - Shewana3_2370 0.55 +0.1 2,849,475 - Shewana3_2370 0.82 +2.7 2,849,769 - +1.7 2,849,804 + -1.3 2,850,048 - +0.9 2,850,202 + Shewana3_2371 0.27 -0.8 2,850,385 + Shewana3_2371 0.55 +0.7 2,850,554 - Shewana3_2371 0.80 -0.5 2,850,737 - +1.7 2,850,873 - Shewana3_2372 0.10 +1.0 2,850,894 - Shewana3_2372 0.11 +1.5 2,850,948 - Shewana3_2372 0.14 +0.9 2,851,053 + Shewana3_2372 0.20 +0.4 2,851,098 - Shewana3_2372 0.23 +0.4 2,851,438 + Shewana3_2372 0.41 +2.7 2,851,486 - Shewana3_2372 0.44 +0.8
Or see this region's nucleotide sequence