Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2367 and Shewana3_2368 are separated by 23 nucleotides Shewana3_2368 and Shewana3_2369 are separated by 175 nucleotides Shewana3_2369 and Shewana3_2370 are separated by 252 nucleotides
Shewana3_2367: Shewana3_2367 - LysR family transcriptional regulator (RefSeq), at 2,845,323 to 2,846,222
_2367
Shewana3_2368: Shewana3_2368 - methyltransferase type 11 (RefSeq), at 2,846,246 to 2,846,980
_2368
Shewana3_2369: Shewana3_2369 - beta-lactamase domain-containing protein (RefSeq), at 2,847,156 to 2,847,959
_2369
Shewana3_2370: Shewana3_2370 - MltD domain-containing protein (RefSeq), at 2,848,212 to 2,849,759
_2370
Position (kb)
2847
2848 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2846.374 kb on + strand, within Shewana3_2368 at 2846.374 kb on + strand, within Shewana3_2368 at 2846.382 kb on - strand, within Shewana3_2368 at 2846.413 kb on - strand, within Shewana3_2368 at 2846.441 kb on - strand, within Shewana3_2368 at 2846.557 kb on - strand, within Shewana3_2368 at 2846.718 kb on - strand, within Shewana3_2368 at 2846.776 kb on + strand, within Shewana3_2368 at 2846.779 kb on - strand, within Shewana3_2368 at 2846.786 kb on + strand, within Shewana3_2368 at 2846.880 kb on - strand, within Shewana3_2368 at 2847.151 kb on + strand at 2847.372 kb on - strand, within Shewana3_2369 at 2847.455 kb on + strand, within Shewana3_2369 at 2847.492 kb on + strand, within Shewana3_2369 at 2847.501 kb on - strand, within Shewana3_2369 at 2847.639 kb on - strand, within Shewana3_2369 at 2847.639 kb on - strand, within Shewana3_2369 at 2847.811 kb on + strand, within Shewana3_2369 at 2847.856 kb on + strand, within Shewana3_2369 at 2847.922 kb on + strand at 2848.279 kb on + strand at 2848.287 kb on - strand at 2848.345 kb on - strand at 2848.708 kb on + strand, within Shewana3_2370
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,846,374 + Shewana3_2368 0.17 -1.2 2,846,374 + Shewana3_2368 0.17 +2.7 2,846,382 - Shewana3_2368 0.19 -0.3 2,846,413 - Shewana3_2368 0.23 -0.2 2,846,441 - Shewana3_2368 0.27 +1.7 2,846,557 - Shewana3_2368 0.42 +0.3 2,846,718 - Shewana3_2368 0.64 -0.9 2,846,776 + Shewana3_2368 0.72 -0.4 2,846,779 - Shewana3_2368 0.73 +0.8 2,846,786 + Shewana3_2368 0.73 -0.4 2,846,880 - Shewana3_2368 0.86 -0.7 2,847,151 + -0.7 2,847,372 - Shewana3_2369 0.27 -0.4 2,847,455 + Shewana3_2369 0.37 -1.9 2,847,492 + Shewana3_2369 0.42 +1.7 2,847,501 - Shewana3_2369 0.43 -0.1 2,847,639 - Shewana3_2369 0.60 +0.5 2,847,639 - Shewana3_2369 0.60 -1.4 2,847,811 + Shewana3_2369 0.81 +0.1 2,847,856 + Shewana3_2369 0.87 +0.1 2,847,922 + -2.3 2,848,279 + +1.1 2,848,287 - +1.1 2,848,345 - +2.0 2,848,708 + Shewana3_2370 0.32 +2.7
Or see this region's nucleotide sequence