Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2369

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2367 and Shewana3_2368 are separated by 23 nucleotidesShewana3_2368 and Shewana3_2369 are separated by 175 nucleotidesShewana3_2369 and Shewana3_2370 are separated by 252 nucleotides Shewana3_2367: Shewana3_2367 - LysR family transcriptional regulator (RefSeq), at 2,845,323 to 2,846,222 _2367 Shewana3_2368: Shewana3_2368 - methyltransferase type 11 (RefSeq), at 2,846,246 to 2,846,980 _2368 Shewana3_2369: Shewana3_2369 - beta-lactamase domain-containing protein (RefSeq), at 2,847,156 to 2,847,959 _2369 Shewana3_2370: Shewana3_2370 - MltD domain-containing protein (RefSeq), at 2,848,212 to 2,849,759 _2370 Position (kb) 2847 2848Strain fitness (log2 ratio) -2 -1 0 1 2at 2846.374 kb on + strand, within Shewana3_2368at 2846.374 kb on + strand, within Shewana3_2368at 2846.382 kb on - strand, within Shewana3_2368at 2846.413 kb on - strand, within Shewana3_2368at 2846.441 kb on - strand, within Shewana3_2368at 2846.557 kb on - strand, within Shewana3_2368at 2846.718 kb on - strand, within Shewana3_2368at 2846.776 kb on + strand, within Shewana3_2368at 2846.779 kb on - strand, within Shewana3_2368at 2846.786 kb on + strand, within Shewana3_2368at 2846.880 kb on - strand, within Shewana3_2368at 2847.151 kb on + strandat 2847.372 kb on - strand, within Shewana3_2369at 2847.455 kb on + strand, within Shewana3_2369at 2847.492 kb on + strand, within Shewana3_2369at 2847.501 kb on - strand, within Shewana3_2369at 2847.639 kb on - strand, within Shewana3_2369at 2847.639 kb on - strand, within Shewana3_2369at 2847.811 kb on + strand, within Shewana3_2369at 2847.856 kb on + strand, within Shewana3_2369at 2847.922 kb on + strandat 2848.279 kb on + strandat 2848.287 kb on - strandat 2848.345 kb on - strandat 2848.708 kb on + strand, within Shewana3_2370

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,846,374 + Shewana3_2368 0.17 -1.2
2,846,374 + Shewana3_2368 0.17 +2.7
2,846,382 - Shewana3_2368 0.19 -0.3
2,846,413 - Shewana3_2368 0.23 -0.2
2,846,441 - Shewana3_2368 0.27 +1.7
2,846,557 - Shewana3_2368 0.42 +0.3
2,846,718 - Shewana3_2368 0.64 -0.9
2,846,776 + Shewana3_2368 0.72 -0.4
2,846,779 - Shewana3_2368 0.73 +0.8
2,846,786 + Shewana3_2368 0.73 -0.4
2,846,880 - Shewana3_2368 0.86 -0.7
2,847,151 + -0.7
2,847,372 - Shewana3_2369 0.27 -0.4
2,847,455 + Shewana3_2369 0.37 -1.9
2,847,492 + Shewana3_2369 0.42 +1.7
2,847,501 - Shewana3_2369 0.43 -0.1
2,847,639 - Shewana3_2369 0.60 +0.5
2,847,639 - Shewana3_2369 0.60 -1.4
2,847,811 + Shewana3_2369 0.81 +0.1
2,847,856 + Shewana3_2369 0.87 +0.1
2,847,922 + -2.3
2,848,279 + +1.1
2,848,287 - +1.1
2,848,345 - +2.0
2,848,708 + Shewana3_2370 0.32 +2.7

Or see this region's nucleotide sequence