Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2323

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2322 and fadE are separated by 183 nucleotidesfadE and Shewana3_2324 are separated by 164 nucleotides Shewana3_2322: Shewana3_2322 - glutamine amidotransferase, class-II (RefSeq), at 2,794,401 to 2,795,240 _2322 Shewana3_2323: fadE - acyl-CoA dehydrogenase (RefSeq), at 2,795,424 to 2,797,871 fadE Shewana3_2324: Shewana3_2324 - sodium/hydrogen exchanger (RefSeq), at 2,798,036 to 2,800,048 _2324 Position (kb) 2795 2796 2797 2798Strain fitness (log2 ratio) -1 0 1 2 3at 2794.851 kb on - strand, within Shewana3_2322at 2794.937 kb on - strand, within Shewana3_2322at 2794.977 kb on - strand, within Shewana3_2322at 2795.109 kb on - strand, within Shewana3_2322at 2795.250 kb on + strandat 2795.340 kb on + strandat 2795.436 kb on - strandat 2795.768 kb on - strand, within fadEat 2795.958 kb on - strand, within fadEat 2795.972 kb on - strand, within fadEat 2796.008 kb on - strand, within fadEat 2796.051 kb on - strand, within fadEat 2796.129 kb on - strand, within fadEat 2796.131 kb on + strand, within fadEat 2796.208 kb on - strand, within fadEat 2796.358 kb on + strand, within fadEat 2796.422 kb on - strand, within fadEat 2796.530 kb on + strand, within fadEat 2796.571 kb on - strand, within fadEat 2796.596 kb on + strand, within fadEat 2796.854 kb on - strand, within fadEat 2796.876 kb on + strand, within fadEat 2797.110 kb on - strand, within fadEat 2797.434 kb on + strand, within fadEat 2797.434 kb on + strand, within fadEat 2797.517 kb on + strand, within fadEat 2797.594 kb on + strand, within fadEat 2797.733 kb on - strandat 2797.733 kb on - strandat 2797.733 kb on - strandat 2797.750 kb on + strandat 2797.904 kb on - strandat 2798.017 kb on - strandat 2798.017 kb on - strandat 2798.028 kb on - strandat 2798.028 kb on - strandat 2798.094 kb on + strandat 2798.202 kb on + strandat 2798.210 kb on - strandat 2798.296 kb on - strand, within Shewana3_2324at 2798.444 kb on - strand, within Shewana3_2324at 2798.544 kb on + strand, within Shewana3_2324at 2798.596 kb on - strand, within Shewana3_2324

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,794,851 - Shewana3_2322 0.54 +0.0
2,794,937 - Shewana3_2322 0.64 +0.8
2,794,977 - Shewana3_2322 0.69 +0.3
2,795,109 - Shewana3_2322 0.84 +0.7
2,795,250 + +2.8
2,795,340 + +0.5
2,795,436 - -0.5
2,795,768 - fadE Shewana3_2323 0.14 +2.8
2,795,958 - fadE Shewana3_2323 0.22 -1.0
2,795,972 - fadE Shewana3_2323 0.22 -0.2
2,796,008 - fadE Shewana3_2323 0.24 -0.4
2,796,051 - fadE Shewana3_2323 0.26 +0.2
2,796,129 - fadE Shewana3_2323 0.29 +0.3
2,796,131 + fadE Shewana3_2323 0.29 -1.3
2,796,208 - fadE Shewana3_2323 0.32 +1.5
2,796,358 + fadE Shewana3_2323 0.38 -0.2
2,796,422 - fadE Shewana3_2323 0.41 -0.3
2,796,530 + fadE Shewana3_2323 0.45 +1.2
2,796,571 - fadE Shewana3_2323 0.47 +0.8
2,796,596 + fadE Shewana3_2323 0.48 +0.2
2,796,854 - fadE Shewana3_2323 0.58 -0.0
2,796,876 + fadE Shewana3_2323 0.59 +1.2
2,797,110 - fadE Shewana3_2323 0.69 +2.2
2,797,434 + fadE Shewana3_2323 0.82 +0.5
2,797,434 + fadE Shewana3_2323 0.82 +1.5
2,797,517 + fadE Shewana3_2323 0.85 -0.4
2,797,594 + fadE Shewana3_2323 0.89 +1.8
2,797,733 - -0.4
2,797,733 - +0.2
2,797,733 - +1.8
2,797,750 + +1.1
2,797,904 - +1.0
2,798,017 - +1.0
2,798,017 - +0.8
2,798,028 - +0.3
2,798,028 - +0.7
2,798,094 + +1.8
2,798,202 + +0.5
2,798,210 - -0.3
2,798,296 - Shewana3_2324 0.13 +0.5
2,798,444 - Shewana3_2324 0.20 +2.2
2,798,544 + Shewana3_2324 0.25 -0.8
2,798,596 - Shewana3_2324 0.28 -0.8

Or see this region's nucleotide sequence