Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ddl and Shewana3_2308 are separated by 78 nucleotides Shewana3_2308 and Shewana3_2309 are separated by 151 nucleotides
Shewana3_2307: ddl - D-alanyl-alanine synthetase A (RefSeq), at 2,772,189 to 2,773,199
ddl
Shewana3_2308: Shewana3_2308 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,773,278 to 2,775,536
_2308
Shewana3_2309: Shewana3_2309 - Fmu (Sun) domain-containing protein (RefSeq), at 2,775,688 to 2,776,902
_2309
Position (kb)
2773
2774
2775
2776 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2773.196 kb on + strand at 2774.167 kb on - strand, within Shewana3_2308 at 2774.394 kb on + strand, within Shewana3_2308 at 2774.403 kb on - strand, within Shewana3_2308 at 2774.529 kb on - strand, within Shewana3_2308 at 2774.670 kb on + strand, within Shewana3_2308 at 2774.860 kb on + strand, within Shewana3_2308 at 2775.119 kb on + strand, within Shewana3_2308 at 2775.127 kb on - strand, within Shewana3_2308 at 2775.445 kb on - strand at 2775.936 kb on - strand, within Shewana3_2309 at 2776.192 kb on - strand, within Shewana3_2309 at 2776.307 kb on + strand, within Shewana3_2309 at 2776.467 kb on - strand, within Shewana3_2309 at 2776.477 kb on - strand, within Shewana3_2309
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,773,196 + +1.6 2,774,167 - Shewana3_2308 0.39 +0.8 2,774,394 + Shewana3_2308 0.49 +1.8 2,774,403 - Shewana3_2308 0.50 -0.2 2,774,529 - Shewana3_2308 0.55 -0.0 2,774,670 + Shewana3_2308 0.62 +1.8 2,774,860 + Shewana3_2308 0.70 +0.5 2,775,119 + Shewana3_2308 0.81 +0.5 2,775,127 - Shewana3_2308 0.82 -0.2 2,775,445 - +2.8 2,775,936 - Shewana3_2309 0.20 +2.2 2,776,192 - Shewana3_2309 0.41 -0.0 2,776,307 + Shewana3_2309 0.51 +1.8 2,776,467 - Shewana3_2309 0.64 +0.7 2,776,477 - Shewana3_2309 0.65 -0.3
Or see this region's nucleotide sequence