Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2302 and Shewana3_2303 are separated by 121 nucleotides Shewana3_2303 and Shewana3_2304 are separated by 25 nucleotides Shewana3_2304 and Shewana3_2305 are separated by 24 nucleotides
Shewana3_2302: Shewana3_2302 - fumarase (RefSeq), at 2,766,330 to 2,767,874
_2302
Shewana3_2303: Shewana3_2303 - aminodeoxychorismate synthase, subunit I (RefSeq), at 2,767,996 to 2,769,399
_2303
Shewana3_2304: Shewana3_2304 - NUDIX hydrolase (RefSeq), at 2,769,425 to 2,770,012
_2304
Shewana3_2305: Shewana3_2305 - hypothetical protein (RefSeq), at 2,770,037 to 2,770,372
_2305
Position (kb)
2767
2768
2769
2770 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2767.987 kb on + strand at 2768.085 kb on + strand at 2768.206 kb on + strand, within Shewana3_2303 at 2768.340 kb on - strand, within Shewana3_2303 at 2768.479 kb on - strand, within Shewana3_2303 at 2768.602 kb on + strand, within Shewana3_2303 at 2768.610 kb on - strand, within Shewana3_2303 at 2768.646 kb on - strand, within Shewana3_2303 at 2768.899 kb on + strand, within Shewana3_2303 at 2768.899 kb on + strand, within Shewana3_2303 at 2768.907 kb on - strand, within Shewana3_2303 at 2768.996 kb on - strand, within Shewana3_2303 at 2768.996 kb on - strand, within Shewana3_2303 at 2768.996 kb on - strand, within Shewana3_2303 at 2768.998 kb on + strand, within Shewana3_2303 at 2769.006 kb on - strand, within Shewana3_2303 at 2769.054 kb on - strand, within Shewana3_2303 at 2769.222 kb on + strand, within Shewana3_2303 at 2769.288 kb on - strand at 2769.296 kb on - strand at 2769.321 kb on + strand at 2769.329 kb on - strand at 2769.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,767,987 + -2.0 2,768,085 + -0.6 2,768,206 + Shewana3_2303 0.15 -0.1 2,768,340 - Shewana3_2303 0.25 +0.8 2,768,479 - Shewana3_2303 0.34 +0.2 2,768,602 + Shewana3_2303 0.43 -0.0 2,768,610 - Shewana3_2303 0.44 -0.2 2,768,646 - Shewana3_2303 0.46 -0.4 2,768,899 + Shewana3_2303 0.64 +0.8 2,768,899 + Shewana3_2303 0.64 +0.6 2,768,907 - Shewana3_2303 0.65 +1.2 2,768,996 - Shewana3_2303 0.71 -1.1 2,768,996 - Shewana3_2303 0.71 +0.1 2,768,996 - Shewana3_2303 0.71 +0.8 2,768,998 + Shewana3_2303 0.71 +1.0 2,769,006 - Shewana3_2303 0.72 -0.4 2,769,054 - Shewana3_2303 0.75 +1.1 2,769,222 + Shewana3_2303 0.87 +0.6 2,769,288 - -0.2 2,769,296 - +0.8 2,769,321 + +0.3 2,769,329 - +0.4 2,769,932 - +2.8
Or see this region's nucleotide sequence