Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2303

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2302 and Shewana3_2303 are separated by 121 nucleotidesShewana3_2303 and Shewana3_2304 are separated by 25 nucleotidesShewana3_2304 and Shewana3_2305 are separated by 24 nucleotides Shewana3_2302: Shewana3_2302 - fumarase (RefSeq), at 2,766,330 to 2,767,874 _2302 Shewana3_2303: Shewana3_2303 - aminodeoxychorismate synthase, subunit I (RefSeq), at 2,767,996 to 2,769,399 _2303 Shewana3_2304: Shewana3_2304 - NUDIX hydrolase (RefSeq), at 2,769,425 to 2,770,012 _2304 Shewana3_2305: Shewana3_2305 - hypothetical protein (RefSeq), at 2,770,037 to 2,770,372 _2305 Position (kb) 2767 2768 2769 2770Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2767.987 kb on + strandat 2768.085 kb on + strandat 2768.206 kb on + strand, within Shewana3_2303at 2768.340 kb on - strand, within Shewana3_2303at 2768.479 kb on - strand, within Shewana3_2303at 2768.602 kb on + strand, within Shewana3_2303at 2768.610 kb on - strand, within Shewana3_2303at 2768.646 kb on - strand, within Shewana3_2303at 2768.899 kb on + strand, within Shewana3_2303at 2768.899 kb on + strand, within Shewana3_2303at 2768.907 kb on - strand, within Shewana3_2303at 2768.996 kb on - strand, within Shewana3_2303at 2768.996 kb on - strand, within Shewana3_2303at 2768.996 kb on - strand, within Shewana3_2303at 2768.998 kb on + strand, within Shewana3_2303at 2769.006 kb on - strand, within Shewana3_2303at 2769.054 kb on - strand, within Shewana3_2303at 2769.222 kb on + strand, within Shewana3_2303at 2769.288 kb on - strandat 2769.296 kb on - strandat 2769.321 kb on + strandat 2769.329 kb on - strandat 2769.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,767,987 + -2.0
2,768,085 + -0.6
2,768,206 + Shewana3_2303 0.15 -0.1
2,768,340 - Shewana3_2303 0.25 +0.8
2,768,479 - Shewana3_2303 0.34 +0.2
2,768,602 + Shewana3_2303 0.43 -0.0
2,768,610 - Shewana3_2303 0.44 -0.2
2,768,646 - Shewana3_2303 0.46 -0.4
2,768,899 + Shewana3_2303 0.64 +0.8
2,768,899 + Shewana3_2303 0.64 +0.6
2,768,907 - Shewana3_2303 0.65 +1.2
2,768,996 - Shewana3_2303 0.71 -1.1
2,768,996 - Shewana3_2303 0.71 +0.1
2,768,996 - Shewana3_2303 0.71 +0.8
2,768,998 + Shewana3_2303 0.71 +1.0
2,769,006 - Shewana3_2303 0.72 -0.4
2,769,054 - Shewana3_2303 0.75 +1.1
2,769,222 + Shewana3_2303 0.87 +0.6
2,769,288 - -0.2
2,769,296 - +0.8
2,769,321 + +0.3
2,769,329 - +0.4
2,769,932 - +2.8

Or see this region's nucleotide sequence