Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2257

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2254 and Shewana3_2255 are separated by 160 nucleotidesShewana3_2255 and Shewana3_2256 are separated by 23 nucleotidesShewana3_2256 and Shewana3_2257 are separated by 32 nucleotidesShewana3_2257 and Shewana3_2258 are separated by 72 nucleotidesShewana3_2258 and Shewana3_2259 are separated by 142 nucleotides Shewana3_2254: Shewana3_2254 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,716,134 to 2,717,771 _2254 Shewana3_2255: Shewana3_2255 - hypothetical protein (RefSeq), at 2,717,932 to 2,718,327 _2255 Shewana3_2256: Shewana3_2256 - HPr family phosphocarrier protein (RefSeq), at 2,718,351 to 2,718,608 _2256 Shewana3_2257: Shewana3_2257 - phosphoenolpyruvate--protein phosphotransferase (RefSeq), at 2,718,641 to 2,720,344 _2257 Shewana3_2258: Shewana3_2258 - glucose-specific PTS system component (RefSeq), at 2,720,417 to 2,720,926 _2258 Shewana3_2259: Shewana3_2259 - hypothetical protein (RefSeq), at 2,721,069 to 2,721,431 _2259 Position (kb) 2718 2719 2720 2721Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2717.935 kb on + strandat 2717.935 kb on + strandat 2718.119 kb on + strand, within Shewana3_2255at 2718.338 kb on + strandat 2718.513 kb on - strand, within Shewana3_2256at 2718.513 kb on - strand, within Shewana3_2256at 2718.566 kb on - strand, within Shewana3_2256at 2718.704 kb on - strandat 2718.704 kb on - strandat 2719.073 kb on + strand, within Shewana3_2257at 2719.476 kb on + strand, within Shewana3_2257at 2719.546 kb on + strand, within Shewana3_2257at 2719.551 kb on + strand, within Shewana3_2257at 2719.554 kb on - strand, within Shewana3_2257at 2719.652 kb on + strand, within Shewana3_2257at 2719.713 kb on + strand, within Shewana3_2257at 2719.900 kb on - strand, within Shewana3_2257at 2720.063 kb on - strand, within Shewana3_2257at 2720.107 kb on + strand, within Shewana3_2257at 2720.307 kb on - strandat 2720.323 kb on + strandat 2720.323 kb on + strandat 2720.365 kb on + strandat 2720.769 kb on + strand, within Shewana3_2258at 2721.000 kb on - strandat 2721.017 kb on - strandat 2721.147 kb on - strand, within Shewana3_2259

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,717,935 + +1.7
2,717,935 + +0.0
2,718,119 + Shewana3_2255 0.47 -1.2
2,718,338 + -1.4
2,718,513 - Shewana3_2256 0.63 +0.5
2,718,513 - Shewana3_2256 0.63 +0.1
2,718,566 - Shewana3_2256 0.83 +0.3
2,718,704 - +1.8
2,718,704 - +1.2
2,719,073 + Shewana3_2257 0.25 -0.5
2,719,476 + Shewana3_2257 0.49 -0.2
2,719,546 + Shewana3_2257 0.53 -0.4
2,719,551 + Shewana3_2257 0.53 +1.8
2,719,554 - Shewana3_2257 0.54 -1.1
2,719,652 + Shewana3_2257 0.59 +1.1
2,719,713 + Shewana3_2257 0.63 -0.0
2,719,900 - Shewana3_2257 0.74 -1.0
2,720,063 - Shewana3_2257 0.83 -2.2
2,720,107 + Shewana3_2257 0.86 +0.5
2,720,307 - +1.2
2,720,323 + -0.4
2,720,323 + -0.7
2,720,365 + -0.2
2,720,769 + Shewana3_2258 0.69 +1.8
2,721,000 - +2.8
2,721,017 - -0.8
2,721,147 - Shewana3_2259 0.21 -0.2

Or see this region's nucleotide sequence