Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2254 and Shewana3_2255 are separated by 160 nucleotides Shewana3_2255 and Shewana3_2256 are separated by 23 nucleotides Shewana3_2256 and Shewana3_2257 are separated by 32 nucleotides Shewana3_2257 and Shewana3_2258 are separated by 72 nucleotides Shewana3_2258 and Shewana3_2259 are separated by 142 nucleotides
Shewana3_2254: Shewana3_2254 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,716,134 to 2,717,771
_2254
Shewana3_2255: Shewana3_2255 - hypothetical protein (RefSeq), at 2,717,932 to 2,718,327
_2255
Shewana3_2256: Shewana3_2256 - HPr family phosphocarrier protein (RefSeq), at 2,718,351 to 2,718,608
_2256
Shewana3_2257: Shewana3_2257 - phosphoenolpyruvate--protein phosphotransferase (RefSeq), at 2,718,641 to 2,720,344
_2257
Shewana3_2258: Shewana3_2258 - glucose-specific PTS system component (RefSeq), at 2,720,417 to 2,720,926
_2258
Shewana3_2259: Shewana3_2259 - hypothetical protein (RefSeq), at 2,721,069 to 2,721,431
_2259
Position (kb)
2718
2719
2720
2721 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2717.935 kb on + strand at 2717.935 kb on + strand at 2718.119 kb on + strand, within Shewana3_2255 at 2718.338 kb on + strand at 2718.513 kb on - strand, within Shewana3_2256 at 2718.513 kb on - strand, within Shewana3_2256 at 2718.566 kb on - strand, within Shewana3_2256 at 2718.704 kb on - strand at 2718.704 kb on - strand at 2719.073 kb on + strand, within Shewana3_2257 at 2719.476 kb on + strand, within Shewana3_2257 at 2719.546 kb on + strand, within Shewana3_2257 at 2719.551 kb on + strand, within Shewana3_2257 at 2719.554 kb on - strand, within Shewana3_2257 at 2719.652 kb on + strand, within Shewana3_2257 at 2719.713 kb on + strand, within Shewana3_2257 at 2719.900 kb on - strand, within Shewana3_2257 at 2720.063 kb on - strand, within Shewana3_2257 at 2720.107 kb on + strand, within Shewana3_2257 at 2720.307 kb on - strand at 2720.323 kb on + strand at 2720.323 kb on + strand at 2720.365 kb on + strand at 2720.769 kb on + strand, within Shewana3_2258 at 2721.000 kb on - strand at 2721.017 kb on - strand at 2721.147 kb on - strand, within Shewana3_2259
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,717,935 + +1.7 2,717,935 + +0.0 2,718,119 + Shewana3_2255 0.47 -1.2 2,718,338 + -1.4 2,718,513 - Shewana3_2256 0.63 +0.5 2,718,513 - Shewana3_2256 0.63 +0.1 2,718,566 - Shewana3_2256 0.83 +0.3 2,718,704 - +1.8 2,718,704 - +1.2 2,719,073 + Shewana3_2257 0.25 -0.5 2,719,476 + Shewana3_2257 0.49 -0.2 2,719,546 + Shewana3_2257 0.53 -0.4 2,719,551 + Shewana3_2257 0.53 +1.8 2,719,554 - Shewana3_2257 0.54 -1.1 2,719,652 + Shewana3_2257 0.59 +1.1 2,719,713 + Shewana3_2257 0.63 -0.0 2,719,900 - Shewana3_2257 0.74 -1.0 2,720,063 - Shewana3_2257 0.83 -2.2 2,720,107 + Shewana3_2257 0.86 +0.5 2,720,307 - +1.2 2,720,323 + -0.4 2,720,323 + -0.7 2,720,365 + -0.2 2,720,769 + Shewana3_2258 0.69 +1.8 2,721,000 - +2.8 2,721,017 - -0.8 2,721,147 - Shewana3_2259 0.21 -0.2
Or see this region's nucleotide sequence