Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2252 and Shewana3_2253 are separated by 218 nucleotides Shewana3_2253 and Shewana3_2254 are separated by 349 nucleotides
Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849
_2252
Shewana3_2253: Shewana3_2253 - hypothetical protein (RefSeq), at 2,715,068 to 2,715,784
_2253
Shewana3_2254: Shewana3_2254 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,716,134 to 2,717,771
_2254
Position (kb)
2715
2716 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2714.166 kb on - strand, within Shewana3_2252 at 2714.454 kb on + strand, within Shewana3_2252 at 2714.651 kb on - strand, within Shewana3_2252 at 2715.074 kb on + strand at 2715.120 kb on + strand at 2715.163 kb on - strand, within Shewana3_2253 at 2715.183 kb on + strand, within Shewana3_2253 at 2715.183 kb on + strand, within Shewana3_2253 at 2715.321 kb on - strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253 at 2716.034 kb on - strand at 2716.036 kb on + strand at 2716.294 kb on - strand at 2716.527 kb on + strand, within Shewana3_2254
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,714,166 - Shewana3_2252 0.34 -0.6 2,714,454 + Shewana3_2252 0.62 +1.2 2,714,651 - Shewana3_2252 0.81 +1.3 2,715,074 + +0.8 2,715,120 + +2.8 2,715,163 - Shewana3_2253 0.13 +0.3 2,715,183 + Shewana3_2253 0.16 -0.0 2,715,183 + Shewana3_2253 0.16 -0.8 2,715,321 - Shewana3_2253 0.35 +2.2 2,715,658 + Shewana3_2253 0.82 -1.2 2,715,658 + Shewana3_2253 0.82 +1.8 2,715,658 + Shewana3_2253 0.82 -0.7 2,716,034 - +1.2 2,716,036 + +2.8 2,716,294 - -0.5 2,716,527 + Shewana3_2254 0.24 +0.8
Or see this region's nucleotide sequence