Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2220

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,666,321	-		Shewana3_2218	0.74	-0.7
2,666,690	+				+1.3
2,666,698	-				-0.7
2,666,881	-				+0.5
2,666,962	-		Shewana3_2219	0.18	-0.9
2,667,062	-		Shewana3_2219	0.45	-1.1
2,667,073	+		Shewana3_2219	0.48	+1.9
2,667,073	+		Shewana3_2219	0.48	+0.3
2,667,081	-		Shewana3_2219	0.50	+0.3
2,667,081	-		Shewana3_2219	0.50	+0.9
2,667,082	-		Shewana3_2219	0.51	+1.5
2,667,143	+		Shewana3_2219	0.67	+0.5
2,667,143	+		Shewana3_2219	0.67	+2.9
2,667,143	+		Shewana3_2219	0.67	+2.9
2,667,151	-		Shewana3_2219	0.69	-0.8
2,667,201	-		Shewana3_2219	0.83	+1.3
2,667,201	-		Shewana3_2219	0.83	-0.1
2,667,201	-		Shewana3_2219	0.83	-1.1
2,667,201	-		Shewana3_2219	0.83	+0.9
2,667,202	-		Shewana3_2219	0.83	+0.5
2,667,225	-		Shewana3_2219	0.90	+1.5
2,667,229	-				+0.8
2,667,388	-				-0.8
2,667,393	-				-1.5
2,667,396	+				+0.9
2,667,403	-				+1.3
2,667,403	-				-0.7
2,667,403	-				+0.7
2,667,404	-				+0.9
2,667,404	-				-0.2
2,667,404	-				+0.6
2,667,404	-				-0.7
2,667,404	-				-0.8
2,667,416	-				+0.8
2,667,416	-				+1.9
2,667,445	-		Shewana3_2220	0.11	-1.1
2,667,465	+		Shewana3_2220	0.12	-0.9
2,667,465	+		Shewana3_2220	0.12	+1.9
2,667,465	+		Shewana3_2220	0.12	+1.3
2,667,465	+		Shewana3_2220	0.12	+1.1
2,667,465	+		Shewana3_2220	0.12	+2.9
2,667,473	-		Shewana3_2220	0.12	-0.1
2,667,473	-		Shewana3_2220	0.12	+1.5
2,667,473	-		Shewana3_2220	0.12	+1.9
2,667,473	-		Shewana3_2220	0.12	-1.0
2,667,473	-		Shewana3_2220	0.12	-1.0
2,667,473	-		Shewana3_2220	0.12	-0.3
2,667,473	-		Shewana3_2220	0.12	+0.9
2,667,473	-		Shewana3_2220	0.12	-1.0
2,667,473	-		Shewana3_2220	0.12	-1.2
2,667,473	-		Shewana3_2220	0.12	+0.1
2,667,473	-		Shewana3_2220	0.12	+1.7
2,667,473	-		Shewana3_2220	0.12	-1.3
2,667,473	-		Shewana3_2220	0.12	+0.4
2,667,473	-		Shewana3_2220	0.12	-2.2
2,667,473	-		Shewana3_2220	0.12	-0.1
2,667,473	-		Shewana3_2220	0.12	-0.7
2,667,473	-		Shewana3_2220	0.12	-1.7
2,667,473	-		Shewana3_2220	0.12	+1.9
2,667,475	+		Shewana3_2220	0.12	+2.9
2,667,475	+		Shewana3_2220	0.12	+1.3
2,667,483	-		Shewana3_2220	0.13	-0.8
2,667,483	-		Shewana3_2220	0.13	-0.3
2,667,483	-		Shewana3_2220	0.13	+0.2
2,667,483	-		Shewana3_2220	0.13	-0.4
2,667,483	-		Shewana3_2220	0.13	-1.2
2,667,483	-		Shewana3_2220	0.13	-0.5
2,667,503	+		Shewana3_2220	0.14	+1.9
2,667,511	-		Shewana3_2220	0.15	+1.7
2,667,518	+		Shewana3_2220	0.15	+1.9
2,667,518	-		Shewana3_2220	0.15	+0.2
2,667,518	-		Shewana3_2220	0.15	+0.5
2,667,524	-		Shewana3_2220	0.15	+2.9
2,667,524	-		Shewana3_2220	0.15	+0.1
2,667,526	+		Shewana3_2220	0.15	-1.4
2,667,534	-		Shewana3_2220	0.16	+0.3
2,667,534	-		Shewana3_2220	0.16	-1.1
2,667,534	-		Shewana3_2220	0.16	+0.4
2,667,534	-		Shewana3_2220	0.16	-0.2
2,667,534	-		Shewana3_2220	0.16	+0.4
2,667,541	-		Shewana3_2220	0.16	-0.6
2,667,588	-		Shewana3_2220	0.19	-0.2
2,667,708	-		Shewana3_2220	0.26	+1.7
2,667,708	-		Shewana3_2220	0.26	-0.8
2,667,811	+		Shewana3_2220	0.32	+1.9
2,667,864	+		Shewana3_2220	0.35	+1.3
2,667,864	+		Shewana3_2220	0.35	+1.3
2,667,864	+		Shewana3_2220	0.35	+1.9
2,667,864	+		Shewana3_2220	0.35	-0.6
2,667,864	+		Shewana3_2220	0.35	+0.8
2,667,872	-		Shewana3_2220	0.36	-1.0
2,667,872	-		Shewana3_2220	0.36	+0.8
2,667,872	-		Shewana3_2220	0.36	+0.9
2,667,872	-		Shewana3_2220	0.36	+0.3
2,667,872	-		Shewana3_2220	0.36	+0.9
2,667,872	-		Shewana3_2220	0.36	-0.6
2,667,885	-		Shewana3_2220	0.37	+0.1
2,667,885	-		Shewana3_2220	0.37	+0.5
2,667,950	-		Shewana3_2220	0.40	-0.6
2,667,950	-		Shewana3_2220	0.40	+0.5
2,667,950	-		Shewana3_2220	0.40	-1.0
2,667,950	-		Shewana3_2220	0.40	-0.3
2,667,950	-		Shewana3_2220	0.40	+1.3
2,667,993	+		Shewana3_2220	0.43	+1.9
2,667,993	+		Shewana3_2220	0.43	+2.9
2,668,001	-		Shewana3_2220	0.43	+1.8
2,668,001	-		Shewana3_2220	0.43	-0.8
2,668,001	-		Shewana3_2220	0.43	-0.6
2,668,251	-		Shewana3_2220	0.58	-0.4
2,668,299	+		Shewana3_2220	0.61	-0.7
2,668,299	+		Shewana3_2220	0.61	+0.3
2,668,299	+		Shewana3_2220	0.61	-0.1
2,668,299	+		Shewana3_2220	0.61	+1.9
2,668,307	-		Shewana3_2220	0.61	+0.5
2,668,307	-		Shewana3_2220	0.61	+2.2
2,668,307	-		Shewana3_2220	0.61	-0.6
2,668,326	-		Shewana3_2220	0.63	-2.0
2,668,345	+		Shewana3_2220	0.64	+1.9
2,668,353	-		Shewana3_2220	0.64	-1.3
2,668,419	-		Shewana3_2220	0.68	+0.1
2,668,436	+		Shewana3_2220	0.69	+1.9
2,668,436	+		Shewana3_2220	0.69	+1.3
2,668,436	+		Shewana3_2220	0.69	+1.9
2,668,436	+		Shewana3_2220	0.69	+2.9
2,668,444	-		Shewana3_2220	0.70	+0.1
2,668,478	-		Shewana3_2220	0.72	+0.5
2,668,492	+		Shewana3_2220	0.72	+2.9
2,668,492	+		Shewana3_2220	0.72	+2.9
2,668,612	-		Shewana3_2220	0.79	+0.3
2,668,697	+		Shewana3_2220	0.84	-0.3
2,668,705	-		Shewana3_2220	0.85	+2.8
2,668,712	+		Shewana3_2220	0.85	+2.8
2,668,721	+		Shewana3_2220	0.86	+0.8
2,668,723	+		Shewana3_2220	0.86	+0.3
2,668,729	-		Shewana3_2220	0.86	+1.8
2,668,763	+		Shewana3_2220	0.88	+0.3
2,668,763	+		Shewana3_2220	0.88	+2.8
2,668,763	+		Shewana3_2220	0.88	+0.8
2,668,771	-		Shewana3_2220	0.89	+0.5
2,668,776	-		Shewana3_2220	0.89	+2.8
2,668,776	-		Shewana3_2220	0.89	+0.8
2,668,807	+				+2.8
2,668,815	-				+2.8
2,668,820	-				+0.1
2,668,843	+				+0.3
2,668,843	+				+0.5
2,668,843	+				+0.5
2,668,843	+				-0.3
2,668,843	+				+1.8
2,668,843	+				-0.6
2,668,843	+				+0.0
2,668,843	+				-2.2
2,668,843	+				+0.8
2,668,851	-				+2.8
2,668,851	-				+1.8
2,668,851	-				+1.8
2,668,851	-				+1.8
2,668,851	-				-0.5
2,668,851	-				+2.8
2,668,851	-				+1.3
2,668,851	-				+0.8
2,668,868	+				+1.3
2,668,869	+				+1.8
2,668,875	+				+1.7
2,668,875	+				+0.8
2,668,875	-				+0.0
2,668,875	-				+0.4
2,668,883	-				+1.8
2,668,883	-				+0.8
2,668,960	+				+0.8
2,668,978	-				+1.3
2,669,037	+		Shewana3_2221	0.26	-0.5
2,669,037	+		Shewana3_2221	0.26	-2.9
2,669,045	-		Shewana3_2221	0.29	+0.8
2,669,045	-		Shewana3_2221	0.29	+1.8
2,669,049	+		Shewana3_2221	0.30	+0.0
2,669,089	+		Shewana3_2221	0.44	+0.7
2,669,089	+		Shewana3_2221	0.44	-1.0
2,669,127	+		Shewana3_2221	0.56	-0.5
2,669,147	+		Shewana3_2221	0.63	+1.0
2,669,304	-				+2.8
2,669,360	+				+0.4
2,669,507	+		Shewana3_2222	0.21	-1.9
2,669,627	+		Shewana3_2222	0.31	+0.3
2,669,640	-		Shewana3_2222	0.33	+1.3
2,669,890	-		Shewana3_2222	0.55	-0.1
2,669,946	-		Shewana3_2222	0.60	+1.9