Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2208

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2207 and Shewana3_2208 are separated by 25 nucleotidesShewana3_2208 and Shewana3_2209 are separated by 232 nucleotides Shewana3_2207: Shewana3_2207 - TonB-dependent receptor (RefSeq), at 2,649,216 to 2,652,050 _2207 Shewana3_2208: Shewana3_2208 - phytase (RefSeq), at 2,652,076 to 2,654,037 _2208 Shewana3_2209: Shewana3_2209 - ABC transporter related (RefSeq), at 2,654,270 to 2,655,862 _2209 Position (kb) 2652 2653 2654 2655Strain fitness (log2 ratio) -1 0 1 2 3 4at 2651.141 kb on + strand, within Shewana3_2207at 2651.159 kb on - strand, within Shewana3_2207at 2651.182 kb on - strand, within Shewana3_2207at 2651.274 kb on + strand, within Shewana3_2207at 2651.582 kb on + strand, within Shewana3_2207at 2651.649 kb on - strand, within Shewana3_2207at 2651.649 kb on - strand, within Shewana3_2207at 2651.649 kb on - strand, within Shewana3_2207at 2651.796 kb on - strandat 2651.935 kb on + strandat 2652.011 kb on - strandat 2652.116 kb on + strandat 2652.194 kb on + strandat 2652.352 kb on - strand, within Shewana3_2208at 2652.376 kb on + strand, within Shewana3_2208at 2652.391 kb on - strand, within Shewana3_2208at 2652.529 kb on + strand, within Shewana3_2208at 2652.694 kb on - strand, within Shewana3_2208at 2652.828 kb on - strand, within Shewana3_2208at 2652.876 kb on - strand, within Shewana3_2208at 2652.876 kb on - strand, within Shewana3_2208at 2652.940 kb on - strand, within Shewana3_2208at 2653.012 kb on - strand, within Shewana3_2208at 2653.159 kb on + strand, within Shewana3_2208at 2653.211 kb on - strand, within Shewana3_2208at 2653.295 kb on + strand, within Shewana3_2208at 2653.303 kb on - strand, within Shewana3_2208at 2653.303 kb on - strand, within Shewana3_2208at 2653.459 kb on + strand, within Shewana3_2208at 2653.459 kb on + strand, within Shewana3_2208at 2653.459 kb on + strand, within Shewana3_2208at 2653.534 kb on + strand, within Shewana3_2208at 2653.617 kb on + strand, within Shewana3_2208at 2653.617 kb on + strand, within Shewana3_2208at 2653.827 kb on + strand, within Shewana3_2208at 2654.057 kb on - strandat 2654.782 kb on - strand, within Shewana3_2209at 2655.003 kb on - strand, within Shewana3_2209

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,651,141 + Shewana3_2207 0.68 +0.6
2,651,159 - Shewana3_2207 0.69 -1.1
2,651,182 - Shewana3_2207 0.69 +1.9
2,651,274 + Shewana3_2207 0.73 +0.6
2,651,582 + Shewana3_2207 0.83 +1.9
2,651,649 - Shewana3_2207 0.86 +2.9
2,651,649 - Shewana3_2207 0.86 +2.9
2,651,649 - Shewana3_2207 0.86 -0.8
2,651,796 - +1.3
2,651,935 + +0.9
2,652,011 - +0.9
2,652,116 + +3.9
2,652,194 + +1.3
2,652,352 - Shewana3_2208 0.14 +1.9
2,652,376 + Shewana3_2208 0.15 -0.5
2,652,391 - Shewana3_2208 0.16 +0.2
2,652,529 + Shewana3_2208 0.23 +1.9
2,652,694 - Shewana3_2208 0.31 +0.6
2,652,828 - Shewana3_2208 0.38 +0.9
2,652,876 - Shewana3_2208 0.41 -1.0
2,652,876 - Shewana3_2208 0.41 -0.3
2,652,940 - Shewana3_2208 0.44 +0.9
2,653,012 - Shewana3_2208 0.48 -0.4
2,653,159 + Shewana3_2208 0.55 +0.8
2,653,211 - Shewana3_2208 0.58 +2.9
2,653,295 + Shewana3_2208 0.62 -1.0
2,653,303 - Shewana3_2208 0.63 +0.6
2,653,303 - Shewana3_2208 0.63 -1.2
2,653,459 + Shewana3_2208 0.70 -0.7
2,653,459 + Shewana3_2208 0.70 +0.5
2,653,459 + Shewana3_2208 0.70 -0.2
2,653,534 + Shewana3_2208 0.74 +1.1
2,653,617 + Shewana3_2208 0.79 +0.8
2,653,617 + Shewana3_2208 0.79 -0.1
2,653,827 + Shewana3_2208 0.89 +0.2
2,654,057 - +1.9
2,654,782 - Shewana3_2209 0.32 +1.9
2,655,003 - Shewana3_2209 0.46 +1.9

Or see this region's nucleotide sequence