Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2177 and Shewana3_2178 are separated by 9 nucleotides Shewana3_2178 and Shewana3_2179 are separated by 229 nucleotides
Shewana3_2177: Shewana3_2177 - hypothetical protein (RefSeq), at 2,610,605 to 2,612,809
_2177
Shewana3_2178: Shewana3_2178 - hypothetical protein (RefSeq), at 2,612,819 to 2,613,241
_2178
Shewana3_2179: Shewana3_2179 - hypothetical protein (RefSeq), at 2,613,471 to 2,614,376
_2179
Position (kb)
2612
2613
2614 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2612.266 kb on + strand, within Shewana3_2177 at 2612.406 kb on + strand, within Shewana3_2177 at 2612.539 kb on - strand, within Shewana3_2177 at 2612.760 kb on + strand at 2612.783 kb on + strand at 2612.804 kb on + strand at 2612.902 kb on - strand, within Shewana3_2178 at 2612.957 kb on + strand, within Shewana3_2178 at 2612.957 kb on + strand, within Shewana3_2178 at 2613.005 kb on + strand, within Shewana3_2178 at 2613.084 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.114 kb on - strand, within Shewana3_2178 at 2613.221 kb on + strand at 2613.226 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.419 kb on - strand at 2613.438 kb on + strand at 2613.462 kb on - strand at 2613.462 kb on - strand at 2613.462 kb on - strand at 2613.464 kb on - strand at 2613.574 kb on - strand, within Shewana3_2179 at 2613.795 kb on - strand, within Shewana3_2179 at 2613.800 kb on - strand, within Shewana3_2179 at 2613.843 kb on - strand, within Shewana3_2179 at 2613.850 kb on - strand, within Shewana3_2179 at 2613.982 kb on + strand, within Shewana3_2179 at 2613.982 kb on + strand, within Shewana3_2179 at 2613.989 kb on - strand, within Shewana3_2179 at 2613.990 kb on - strand, within Shewana3_2179 at 2613.990 kb on - strand at 2614.042 kb on - strand, within Shewana3_2179 at 2614.081 kb on - strand, within Shewana3_2179 at 2614.101 kb on - strand, within Shewana3_2179 at 2614.160 kb on - strand, within Shewana3_2179 at 2614.194 kb on + strand, within Shewana3_2179 at 2614.202 kb on - strand, within Shewana3_2179 at 2614.202 kb on - strand, within Shewana3_2179 at 2614.204 kb on + strand, within Shewana3_2179
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,612,266 + Shewana3_2177 0.75 -0.8 2,612,406 + Shewana3_2177 0.82 +1.3 2,612,539 - Shewana3_2177 0.88 +2.9 2,612,760 + +2.9 2,612,783 + +2.9 2,612,804 + +1.7 2,612,902 - Shewana3_2178 0.20 +2.9 2,612,957 + Shewana3_2178 0.33 +1.9 2,612,957 + Shewana3_2178 0.33 +0.9 2,613,005 + Shewana3_2178 0.44 +2.9 2,613,084 + Shewana3_2178 0.63 +1.3 2,613,106 + Shewana3_2178 0.68 +0.3 2,613,106 + Shewana3_2178 0.68 +0.3 2,613,106 + Shewana3_2178 0.68 +0.6 2,613,106 + Shewana3_2178 0.68 +1.3 2,613,114 - Shewana3_2178 0.70 +0.1 2,613,221 + +1.3 2,613,226 + +1.9 2,613,385 + -0.0 2,613,385 + +1.7 2,613,385 + -0.2 2,613,385 + +0.0 2,613,385 + -0.6 2,613,419 - +0.9 2,613,438 + +1.9 2,613,462 - +2.9 2,613,462 - +1.3 2,613,462 - +0.9 2,613,464 - +0.6 2,613,574 - Shewana3_2179 0.11 +1.9 2,613,795 - Shewana3_2179 0.36 +1.9 2,613,800 - Shewana3_2179 0.36 -1.4 2,613,843 - Shewana3_2179 0.41 -1.5 2,613,850 - Shewana3_2179 0.42 +0.9 2,613,982 + Shewana3_2179 0.56 +1.9 2,613,982 + Shewana3_2179 0.56 +1.9 2,613,989 - Shewana3_2179 0.57 +2.9 2,613,990 - Shewana3_2179 0.57 +1.9 2,613,990 - +2.9 2,614,042 - Shewana3_2179 0.63 +0.6 2,614,081 - Shewana3_2179 0.67 +1.9 2,614,101 - Shewana3_2179 0.70 -0.8 2,614,160 - Shewana3_2179 0.76 +1.9 2,614,194 + Shewana3_2179 0.80 +2.9 2,614,202 - Shewana3_2179 0.81 -0.5 2,614,202 - Shewana3_2179 0.81 -0.5 2,614,204 + Shewana3_2179 0.81 +0.3
Or see this region's nucleotide sequence