Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2163 and Shewana3_2164 are separated by 188 nucleotides Shewana3_2164 and Shewana3_2165 overlap by 4 nucleotides Shewana3_2165 and Shewana3_2166 are separated by 139 nucleotides
Shewana3_2163: Shewana3_2163 - radical activating enzyme (RefSeq), at 2,592,129 to 2,592,797
_2163
Shewana3_2164: Shewana3_2164 - queuosine biosynthesis protein QueC (RefSeq), at 2,592,986 to 2,593,705
_2164
Shewana3_2165: Shewana3_2165 - rhomboid family protein (RefSeq), at 2,593,702 to 2,594,307
_2165
Shewana3_2166: Shewana3_2166 - excinuclease ABC subunit B (RefSeq), at 2,594,447 to 2,596,468
_2166
Position (kb)
2593
2594
2595 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2592.920 kb on - strand at 2593.225 kb on - strand, within Shewana3_2164 at 2593.278 kb on + strand, within Shewana3_2164 at 2593.329 kb on - strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.558 kb on - strand, within Shewana3_2164 at 2593.694 kb on + strand at 2593.773 kb on + strand, within Shewana3_2165 at 2593.812 kb on + strand, within Shewana3_2165 at 2593.858 kb on + strand, within Shewana3_2165 at 2594.014 kb on - strand, within Shewana3_2165 at 2594.045 kb on + strand, within Shewana3_2165 at 2594.177 kb on - strand at 2594.378 kb on + strand at 2594.497 kb on - strand at 2594.573 kb on - strand at 2594.637 kb on + strand at 2594.699 kb on - strand, within Shewana3_2166 at 2594.723 kb on - strand, within Shewana3_2166 at 2594.763 kb on + strand, within Shewana3_2166 at 2594.783 kb on - strand, within Shewana3_2166 at 2594.941 kb on - strand, within Shewana3_2166 at 2594.941 kb on - strand, within Shewana3_2166 at 2595.013 kb on + strand, within Shewana3_2166 at 2595.201 kb on - strand, within Shewana3_2166 at 2595.263 kb on - strand, within Shewana3_2166
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,592,920 - -0.4 2,593,225 - Shewana3_2164 0.33 +1.3 2,593,278 + Shewana3_2164 0.41 +1.2 2,593,329 - Shewana3_2164 0.48 +1.6 2,593,550 + Shewana3_2164 0.78 +0.9 2,593,550 + Shewana3_2164 0.78 +1.3 2,593,550 + Shewana3_2164 0.78 +1.9 2,593,558 - Shewana3_2164 0.79 -0.3 2,593,694 + +0.9 2,593,773 + Shewana3_2165 0.12 +1.6 2,593,812 + Shewana3_2165 0.18 +1.6 2,593,858 + Shewana3_2165 0.26 -0.7 2,594,014 - Shewana3_2165 0.51 +2.9 2,594,045 + Shewana3_2165 0.57 +1.6 2,594,177 - +2.9 2,594,378 + +2.9 2,594,497 - +1.3 2,594,573 - -0.6 2,594,637 + +0.6 2,594,699 - Shewana3_2166 0.12 +0.3 2,594,723 - Shewana3_2166 0.14 -1.6 2,594,763 + Shewana3_2166 0.16 +0.9 2,594,783 - Shewana3_2166 0.17 +0.6 2,594,941 - Shewana3_2166 0.24 -0.1 2,594,941 - Shewana3_2166 0.24 +0.3 2,595,013 + Shewana3_2166 0.28 +0.6 2,595,201 - Shewana3_2166 0.37 -2.7 2,595,263 - Shewana3_2166 0.40 +0.0
Or see this region's nucleotide sequence