Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2158 and Shewana3_2159 are separated by 27 nucleotides Shewana3_2159 and Shewana3_2160 are separated by 79 nucleotides Shewana3_2160 and Shewana3_2161 are separated by 188 nucleotides Shewana3_2161 and Shewana3_2162 are separated by 249 nucleotides
Shewana3_2158: Shewana3_2158 - hypothetical protein (RefSeq), at 2,586,807 to 2,587,385
_2158
Shewana3_2159: Shewana3_2159 - SecC motif-containing protein (RefSeq), at 2,587,413 to 2,587,907
_2159
Shewana3_2160: Shewana3_2160 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 2,587,987 to 2,590,170
_2160
Shewana3_2161: Shewana3_2161 - hypothetical protein (RefSeq), at 2,590,359 to 2,590,646
_2161
Shewana3_2162: Shewana3_2162 - hypothetical protein (RefSeq), at 2,590,896 to 2,591,384
_2162
Position (kb)
2587
2588
2589
2590
2591 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2587.516 kb on + strand, within Shewana3_2159 at 2587.615 kb on + strand, within Shewana3_2159 at 2587.623 kb on - strand, within Shewana3_2159 at 2587.623 kb on - strand, within Shewana3_2159 at 2587.635 kb on + strand, within Shewana3_2159 at 2587.651 kb on + strand, within Shewana3_2159 at 2587.681 kb on + strand, within Shewana3_2159 at 2587.895 kb on + strand at 2588.416 kb on - strand, within Shewana3_2160 at 2588.416 kb on - strand, within Shewana3_2160 at 2588.798 kb on + strand, within Shewana3_2160 at 2589.153 kb on - strand, within Shewana3_2160 at 2589.167 kb on - strand, within Shewana3_2160 at 2589.374 kb on - strand, within Shewana3_2160 at 2589.419 kb on + strand, within Shewana3_2160 at 2589.612 kb on - strand, within Shewana3_2160 at 2589.841 kb on - strand at 2589.868 kb on - strand, within Shewana3_2160 at 2589.946 kb on - strand, within Shewana3_2160 at 2590.174 kb on + strand at 2590.350 kb on + strand at 2590.358 kb on - strand at 2590.515 kb on - strand, within Shewana3_2161 at 2590.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,587,516 + Shewana3_2159 0.21 +1.1 2,587,615 + Shewana3_2159 0.41 +1.7 2,587,623 - Shewana3_2159 0.42 +2.9 2,587,623 - Shewana3_2159 0.42 -0.1 2,587,635 + Shewana3_2159 0.45 +1.1 2,587,651 + Shewana3_2159 0.48 +0.4 2,587,681 + Shewana3_2159 0.54 +1.2 2,587,895 + +0.6 2,588,416 - Shewana3_2160 0.20 +0.6 2,588,416 - Shewana3_2160 0.20 +2.9 2,588,798 + Shewana3_2160 0.37 +1.9 2,589,153 - Shewana3_2160 0.53 +2.9 2,589,167 - Shewana3_2160 0.54 +0.3 2,589,374 - Shewana3_2160 0.64 +0.6 2,589,419 + Shewana3_2160 0.66 +2.9 2,589,612 - Shewana3_2160 0.74 +0.7 2,589,841 - +2.9 2,589,868 - Shewana3_2160 0.86 +2.9 2,589,946 - Shewana3_2160 0.90 +2.3 2,590,174 + +1.9 2,590,350 + -1.5 2,590,358 - -1.4 2,590,515 - Shewana3_2161 0.54 +0.2 2,590,675 - +1.9
Or see this region's nucleotide sequence