Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2156 and Shewana3_2157 are separated by 169 nucleotides Shewana3_2157 and Shewana3_2158 are separated by 132 nucleotides Shewana3_2158 and Shewana3_2159 are separated by 27 nucleotides
Shewana3_2156: Shewana3_2156 - peptidase M2, peptidyl-dipeptidase A (RefSeq), at 2,584,055 to 2,585,914
_2156
Shewana3_2157: Shewana3_2157 - Smr protein/MutS2 (RefSeq), at 2,586,084 to 2,586,674
_2157
Shewana3_2158: Shewana3_2158 - hypothetical protein (RefSeq), at 2,586,807 to 2,587,385
_2158
Shewana3_2159: Shewana3_2159 - SecC motif-containing protein (RefSeq), at 2,587,413 to 2,587,907
_2159
Position (kb)
2586
2587 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2585.247 kb on + strand, within Shewana3_2156 at 2585.255 kb on - strand, within Shewana3_2156 at 2585.304 kb on - strand, within Shewana3_2156 at 2585.343 kb on + strand, within Shewana3_2156 at 2585.362 kb on + strand, within Shewana3_2156 at 2585.677 kb on - strand, within Shewana3_2156 at 2585.800 kb on - strand at 2585.945 kb on - strand at 2585.960 kb on + strand at 2585.960 kb on + strand at 2585.968 kb on - strand at 2585.968 kb on - strand at 2586.135 kb on - strand at 2586.135 kb on - strand at 2586.150 kb on - strand, within Shewana3_2157 at 2586.150 kb on - strand, within Shewana3_2157 at 2586.284 kb on - strand, within Shewana3_2157 at 2586.411 kb on - strand, within Shewana3_2157 at 2586.418 kb on + strand, within Shewana3_2157 at 2586.613 kb on + strand, within Shewana3_2157 at 2587.516 kb on + strand, within Shewana3_2159 at 2587.615 kb on + strand, within Shewana3_2159 at 2587.623 kb on - strand, within Shewana3_2159 at 2587.623 kb on - strand, within Shewana3_2159 at 2587.635 kb on + strand, within Shewana3_2159 at 2587.651 kb on + strand, within Shewana3_2159
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,585,247 + Shewana3_2156 0.64 +0.1 2,585,255 - Shewana3_2156 0.65 +1.3 2,585,304 - Shewana3_2156 0.67 +0.6 2,585,343 + Shewana3_2156 0.69 -1.3 2,585,362 + Shewana3_2156 0.70 +0.9 2,585,677 - Shewana3_2156 0.87 +0.7 2,585,800 - +1.3 2,585,945 - +2.9 2,585,960 + +2.1 2,585,960 + +1.0 2,585,968 - +1.3 2,585,968 - +0.3 2,586,135 - +0.2 2,586,135 - +0.8 2,586,150 - Shewana3_2157 0.11 -0.3 2,586,150 - Shewana3_2157 0.11 +0.7 2,586,284 - Shewana3_2157 0.34 +0.9 2,586,411 - Shewana3_2157 0.55 +0.8 2,586,418 + Shewana3_2157 0.57 +2.9 2,586,613 + Shewana3_2157 0.90 +2.9 2,587,516 + Shewana3_2159 0.21 +1.1 2,587,615 + Shewana3_2159 0.41 +1.7 2,587,623 - Shewana3_2159 0.42 +2.9 2,587,623 - Shewana3_2159 0.42 -0.1 2,587,635 + Shewana3_2159 0.45 +1.1 2,587,651 + Shewana3_2159 0.48 +0.4
Or see this region's nucleotide sequence