Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2157

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2156 and Shewana3_2157 are separated by 169 nucleotidesShewana3_2157 and Shewana3_2158 are separated by 132 nucleotidesShewana3_2158 and Shewana3_2159 are separated by 27 nucleotides Shewana3_2156: Shewana3_2156 - peptidase M2, peptidyl-dipeptidase A (RefSeq), at 2,584,055 to 2,585,914 _2156 Shewana3_2157: Shewana3_2157 - Smr protein/MutS2 (RefSeq), at 2,586,084 to 2,586,674 _2157 Shewana3_2158: Shewana3_2158 - hypothetical protein (RefSeq), at 2,586,807 to 2,587,385 _2158 Shewana3_2159: Shewana3_2159 - SecC motif-containing protein (RefSeq), at 2,587,413 to 2,587,907 _2159 Position (kb) 2586 2587Strain fitness (log2 ratio) -1 0 1 2 3at 2585.247 kb on + strand, within Shewana3_2156at 2585.255 kb on - strand, within Shewana3_2156at 2585.304 kb on - strand, within Shewana3_2156at 2585.343 kb on + strand, within Shewana3_2156at 2585.362 kb on + strand, within Shewana3_2156at 2585.677 kb on - strand, within Shewana3_2156at 2585.800 kb on - strandat 2585.945 kb on - strandat 2585.960 kb on + strandat 2585.960 kb on + strandat 2585.968 kb on - strandat 2585.968 kb on - strandat 2586.135 kb on - strandat 2586.135 kb on - strandat 2586.150 kb on - strand, within Shewana3_2157at 2586.150 kb on - strand, within Shewana3_2157at 2586.284 kb on - strand, within Shewana3_2157at 2586.411 kb on - strand, within Shewana3_2157at 2586.418 kb on + strand, within Shewana3_2157at 2586.613 kb on + strand, within Shewana3_2157at 2587.516 kb on + strand, within Shewana3_2159at 2587.615 kb on + strand, within Shewana3_2159at 2587.623 kb on - strand, within Shewana3_2159at 2587.623 kb on - strand, within Shewana3_2159at 2587.635 kb on + strand, within Shewana3_2159at 2587.651 kb on + strand, within Shewana3_2159

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,585,247 + Shewana3_2156 0.64 +0.1
2,585,255 - Shewana3_2156 0.65 +1.3
2,585,304 - Shewana3_2156 0.67 +0.6
2,585,343 + Shewana3_2156 0.69 -1.3
2,585,362 + Shewana3_2156 0.70 +0.9
2,585,677 - Shewana3_2156 0.87 +0.7
2,585,800 - +1.3
2,585,945 - +2.9
2,585,960 + +2.1
2,585,960 + +1.0
2,585,968 - +1.3
2,585,968 - +0.3
2,586,135 - +0.2
2,586,135 - +0.8
2,586,150 - Shewana3_2157 0.11 -0.3
2,586,150 - Shewana3_2157 0.11 +0.7
2,586,284 - Shewana3_2157 0.34 +0.9
2,586,411 - Shewana3_2157 0.55 +0.8
2,586,418 + Shewana3_2157 0.57 +2.9
2,586,613 + Shewana3_2157 0.90 +2.9
2,587,516 + Shewana3_2159 0.21 +1.1
2,587,615 + Shewana3_2159 0.41 +1.7
2,587,623 - Shewana3_2159 0.42 +2.9
2,587,623 - Shewana3_2159 0.42 -0.1
2,587,635 + Shewana3_2159 0.45 +1.1
2,587,651 + Shewana3_2159 0.48 +0.4

Or see this region's nucleotide sequence