Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2103 and Shewana3_2104 are separated by 992 nucleotides Shewana3_2104 and Shewana3_2105 are separated by 450 nucleotides
Shewana3_2103: Shewana3_2103 - restriction endonuclease (RefSeq), at 2,525,702 to 2,526,448
_2103
Shewana3_2104: Shewana3_2104 - phage integrase family protein (RefSeq), at 2,527,441 to 2,528,736
_2104
Shewana3_2105: Shewana3_2105 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 2,529,187 to 2,530,764
_2105
Position (kb)
2527
2528
2529 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2526.649 kb on - strand at 2526.991 kb on - strand at 2527.176 kb on - strand at 2527.176 kb on - strand at 2527.273 kb on - strand at 2527.284 kb on - strand at 2527.571 kb on - strand, within Shewana3_2104 at 2527.948 kb on - strand, within Shewana3_2104 at 2528.119 kb on + strand, within Shewana3_2104 at 2528.175 kb on + strand, within Shewana3_2104 at 2528.182 kb on - strand, within Shewana3_2104 at 2528.526 kb on - strand, within Shewana3_2104 at 2528.902 kb on - strand at 2528.969 kb on - strand at 2529.309 kb on + strand at 2529.382 kb on - strand, within Shewana3_2105 at 2529.384 kb on + strand, within Shewana3_2105 at 2529.418 kb on + strand, within Shewana3_2105 at 2529.471 kb on + strand, within Shewana3_2105 at 2529.546 kb on - strand, within Shewana3_2105 at 2529.732 kb on - strand, within Shewana3_2105
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,526,649 - +1.9 2,526,991 - +0.6 2,527,176 - +0.9 2,527,176 - +2.9 2,527,273 - +2.9 2,527,284 - -0.8 2,527,571 - Shewana3_2104 0.10 +2.9 2,527,948 - Shewana3_2104 0.39 -0.1 2,528,119 + Shewana3_2104 0.52 -0.3 2,528,175 + Shewana3_2104 0.57 +2.9 2,528,182 - Shewana3_2104 0.57 -0.1 2,528,526 - Shewana3_2104 0.84 -1.3 2,528,902 - +1.2 2,528,969 - +0.5 2,529,309 + -0.5 2,529,382 - Shewana3_2105 0.12 +0.3 2,529,384 + Shewana3_2105 0.12 -1.3 2,529,418 + Shewana3_2105 0.15 +1.3 2,529,471 + Shewana3_2105 0.18 +1.3 2,529,546 - Shewana3_2105 0.23 +0.3 2,529,732 - Shewana3_2105 0.35 -0.1
Or see this region's nucleotide sequence