Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2084 and Shewana3_2085 are separated by 179 nucleotides Shewana3_2085 and Shewana3_2086 are separated by 586 nucleotides
Shewana3_2084: Shewana3_2084 - permease (RefSeq), at 2,496,581 to 2,497,336
_2084
Shewana3_2085: Shewana3_2085 - TonB-dependent receptor (RefSeq), at 2,497,516 to 2,500,353
_2085
Shewana3_2086: Shewana3_2086 - beta-xylosidase-like protein (RefSeq), at 2,500,940 to 2,504,305
_2086
Position (kb)
2497
2498
2499
2500
2501 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2496.685 kb on + strand, within Shewana3_2084 at 2496.704 kb on - strand, within Shewana3_2084 at 2496.725 kb on + strand, within Shewana3_2084 at 2496.766 kb on - strand, within Shewana3_2084 at 2497.067 kb on - strand, within Shewana3_2084 at 2497.141 kb on - strand, within Shewana3_2084 at 2497.362 kb on - strand at 2497.428 kb on + strand at 2497.436 kb on - strand at 2497.523 kb on + strand at 2497.552 kb on + strand at 2497.692 kb on + strand at 2497.705 kb on - strand at 2497.991 kb on - strand, within Shewana3_2085 at 2498.078 kb on - strand, within Shewana3_2085 at 2498.262 kb on - strand, within Shewana3_2085 at 2498.361 kb on + strand, within Shewana3_2085 at 2498.608 kb on - strand, within Shewana3_2085 at 2498.627 kb on + strand, within Shewana3_2085 at 2499.255 kb on - strand at 2499.351 kb on + strand, within Shewana3_2085 at 2499.359 kb on - strand, within Shewana3_2085 at 2499.531 kb on + strand, within Shewana3_2085 at 2499.555 kb on + strand, within Shewana3_2085 at 2499.578 kb on + strand, within Shewana3_2085 at 2499.964 kb on + strand, within Shewana3_2085 at 2500.074 kb on - strand at 2500.189 kb on - strand at 2500.232 kb on + strand at 2501.037 kb on + strand at 2501.053 kb on + strand at 2501.245 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,496,685 + Shewana3_2084 0.14 +0.1 2,496,704 - Shewana3_2084 0.16 -2.5 2,496,725 + Shewana3_2084 0.19 +2.9 2,496,766 - Shewana3_2084 0.24 +0.5 2,497,067 - Shewana3_2084 0.64 -0.5 2,497,141 - Shewana3_2084 0.74 -1.5 2,497,362 - +1.3 2,497,428 + +1.9 2,497,436 - -0.1 2,497,523 + +1.9 2,497,552 + +2.9 2,497,692 + +0.1 2,497,705 - +2.2 2,497,991 - Shewana3_2085 0.17 +0.0 2,498,078 - Shewana3_2085 0.20 +0.8 2,498,262 - Shewana3_2085 0.26 -0.7 2,498,361 + Shewana3_2085 0.30 +1.3 2,498,608 - Shewana3_2085 0.38 -0.1 2,498,627 + Shewana3_2085 0.39 +1.9 2,499,255 - +3.9 2,499,351 + Shewana3_2085 0.65 +0.9 2,499,359 - Shewana3_2085 0.65 +0.1 2,499,531 + Shewana3_2085 0.71 -0.1 2,499,555 + Shewana3_2085 0.72 -0.8 2,499,578 + Shewana3_2085 0.73 -0.4 2,499,964 + Shewana3_2085 0.86 +1.9 2,500,074 - -0.2 2,500,189 - +1.3 2,500,232 + -0.1 2,501,037 + +0.6 2,501,053 + -0.5 2,501,245 + -0.8
Or see this region's nucleotide sequence