Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2083 and Shewana3_2084 are separated by 179 nucleotides Shewana3_2084 and Shewana3_2085 are separated by 179 nucleotides
Shewana3_2083: Shewana3_2083 - glycoside hydrolase family protein (RefSeq), at 2,494,497 to 2,496,401
_2083
Shewana3_2084: Shewana3_2084 - permease (RefSeq), at 2,496,581 to 2,497,336
_2084
Shewana3_2085: Shewana3_2085 - TonB-dependent receptor (RefSeq), at 2,497,516 to 2,500,353
_2085
Position (kb)
2496
2497
2498 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.651 kb on - strand, within Shewana3_2083 at 2495.671 kb on - strand, within Shewana3_2083 at 2495.782 kb on - strand, within Shewana3_2083 at 2495.784 kb on + strand, within Shewana3_2083 at 2495.786 kb on + strand, within Shewana3_2083 at 2495.822 kb on + strand, within Shewana3_2083 at 2495.980 kb on - strand, within Shewana3_2083 at 2496.044 kb on + strand, within Shewana3_2083 at 2496.113 kb on + strand, within Shewana3_2083 at 2496.161 kb on + strand, within Shewana3_2083 at 2496.413 kb on + strand at 2496.416 kb on - strand at 2496.513 kb on + strand at 2496.685 kb on + strand, within Shewana3_2084 at 2496.704 kb on - strand, within Shewana3_2084 at 2496.725 kb on + strand, within Shewana3_2084 at 2496.766 kb on - strand, within Shewana3_2084 at 2497.067 kb on - strand, within Shewana3_2084 at 2497.141 kb on - strand, within Shewana3_2084 at 2497.362 kb on - strand at 2497.428 kb on + strand at 2497.436 kb on - strand at 2497.523 kb on + strand at 2497.552 kb on + strand at 2497.692 kb on + strand at 2497.705 kb on - strand at 2497.991 kb on - strand, within Shewana3_2085 at 2498.078 kb on - strand, within Shewana3_2085 at 2498.262 kb on - strand, within Shewana3_2085
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,495,643 + Shewana3_2083 0.60 -0.5 2,495,643 + Shewana3_2083 0.60 +1.3 2,495,643 + Shewana3_2083 0.60 -0.1 2,495,643 + Shewana3_2083 0.60 +1.3 2,495,651 - Shewana3_2083 0.61 +0.6 2,495,671 - Shewana3_2083 0.62 +0.6 2,495,782 - Shewana3_2083 0.67 +2.9 2,495,784 + Shewana3_2083 0.68 -0.2 2,495,786 + Shewana3_2083 0.68 -1.4 2,495,822 + Shewana3_2083 0.70 +0.0 2,495,980 - Shewana3_2083 0.78 +0.6 2,496,044 + Shewana3_2083 0.81 +0.7 2,496,113 + Shewana3_2083 0.85 +0.1 2,496,161 + Shewana3_2083 0.87 +0.8 2,496,413 + +0.7 2,496,416 - +0.9 2,496,513 + +1.3 2,496,685 + Shewana3_2084 0.14 +0.1 2,496,704 - Shewana3_2084 0.16 -2.5 2,496,725 + Shewana3_2084 0.19 +2.9 2,496,766 - Shewana3_2084 0.24 +0.5 2,497,067 - Shewana3_2084 0.64 -0.5 2,497,141 - Shewana3_2084 0.74 -1.5 2,497,362 - +1.3 2,497,428 + +1.9 2,497,436 - -0.1 2,497,523 + +1.9 2,497,552 + +2.9 2,497,692 + +0.1 2,497,705 - +2.2 2,497,991 - Shewana3_2085 0.17 +0.0 2,498,078 - Shewana3_2085 0.20 +0.8 2,498,262 - Shewana3_2085 0.26 -0.7
Or see this region's nucleotide sequence