Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2082

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2081 and Shewana3_2082 are separated by 208 nucleotidesShewana3_2082 and Shewana3_2083 overlap by 1 nucleotides Shewana3_2081: Shewana3_2081 - sugar (glycoside-Pentoside-hexuronide) transporter (RefSeq), at 2,491,773 to 2,493,218 _2081 Shewana3_2082: Shewana3_2082 - arabinan endo-1,5-alpha-L-arabinosidase (RefSeq), at 2,493,427 to 2,494,497 _2082 Shewana3_2083: Shewana3_2083 - glycoside hydrolase family protein (RefSeq), at 2,494,497 to 2,496,401 _2083 Position (kb) 2493 2494 2495Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2492.476 kb on - strand, within Shewana3_2081at 2492.572 kb on + strand, within Shewana3_2081at 2492.929 kb on + strand, within Shewana3_2081at 2493.767 kb on - strand, within Shewana3_2082at 2493.973 kb on + strand, within Shewana3_2082at 2493.974 kb on + strand, within Shewana3_2082at 2494.192 kb on + strand, within Shewana3_2082at 2494.265 kb on - strand, within Shewana3_2082at 2494.432 kb on - strandat 2494.436 kb on + strandat 2494.436 kb on + strandat 2494.436 kb on + strandat 2494.451 kb on + strandat 2494.577 kb on + strandat 2494.585 kb on - strandat 2494.585 kb on - strandat 2495.041 kb on - strand, within Shewana3_2083at 2495.099 kb on + strand, within Shewana3_2083at 2495.119 kb on + strand, within Shewana3_2083at 2495.126 kb on + strand, within Shewana3_2083at 2495.357 kb on - strand, within Shewana3_2083

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,492,476 - Shewana3_2081 0.49 -0.4
2,492,572 + Shewana3_2081 0.55 +1.3
2,492,929 + Shewana3_2081 0.80 +1.3
2,493,767 - Shewana3_2082 0.32 +0.9
2,493,973 + Shewana3_2082 0.51 -3.4
2,493,974 + Shewana3_2082 0.51 -0.4
2,494,192 + Shewana3_2082 0.71 +0.6
2,494,265 - Shewana3_2082 0.78 +0.9
2,494,432 - +2.9
2,494,436 + -0.1
2,494,436 + +2.3
2,494,436 + -0.1
2,494,451 + +0.8
2,494,577 + -0.4
2,494,585 - +2.9
2,494,585 - +0.9
2,495,041 - Shewana3_2083 0.29 -0.2
2,495,099 + Shewana3_2083 0.32 +0.8
2,495,119 + Shewana3_2083 0.33 -1.6
2,495,126 + Shewana3_2083 0.33 +0.1
2,495,357 - Shewana3_2083 0.45 +1.9

Or see this region's nucleotide sequence