Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2051

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2050 and Shewana3_2051 are separated by 69 nucleotidesShewana3_2051 and Shewana3_2052 are separated by 8 nucleotides Shewana3_2050: Shewana3_2050 - DNA translocase FtsK (RefSeq), at 2,457,918 to 2,460,671 _2050 Shewana3_2051: Shewana3_2051 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 2,460,741 to 2,461,361 _2051 Shewana3_2052: Shewana3_2052 - recombination factor protein RarA (RefSeq), at 2,461,370 to 2,462,701 _2052 Position (kb) 2460 2461 2462Strain fitness (log2 ratio) -1 0 1 2 3at 2461.455 kb on - strandat 2461.496 kb on + strandat 2461.736 kb on - strand, within Shewana3_2052at 2461.975 kb on + strand, within Shewana3_2052at 2461.975 kb on + strand, within Shewana3_2052at 2462.001 kb on + strand, within Shewana3_2052at 2462.033 kb on - strand, within Shewana3_2052at 2462.307 kb on - strand, within Shewana3_2052

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,461,455 - -0.6
2,461,496 + +1.9
2,461,736 - Shewana3_2052 0.27 +0.3
2,461,975 + Shewana3_2052 0.45 +1.9
2,461,975 + Shewana3_2052 0.45 -0.9
2,462,001 + Shewana3_2052 0.47 +0.9
2,462,033 - Shewana3_2052 0.50 +2.9
2,462,307 - Shewana3_2052 0.70 +0.6

Or see this region's nucleotide sequence