Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1994 and Shewana3_1995 are separated by 50 nucleotides Shewana3_1995 and Shewana3_1996 are separated by 197 nucleotides
Shewana3_1994: Shewana3_1994 - outer membrane efflux protein (RefSeq), at 2,376,345 to 2,377,832
_1994
Shewana3_1995: Shewana3_1995 - hypothetical protein (RefSeq), at 2,377,883 to 2,379,940
_1995
Shewana3_1996: Shewana3_1996 - phage integrase family protein (RefSeq), at 2,380,138 to 2,381,247
_1996
Position (kb)
2377
2378
2379
2380 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2376.986 kb on + strand, within Shewana3_1994 at 2377.434 kb on - strand, within Shewana3_1994 at 2377.945 kb on + strand at 2378.450 kb on - strand, within Shewana3_1995 at 2378.450 kb on - strand, within Shewana3_1995 at 2378.521 kb on - strand, within Shewana3_1995 at 2378.585 kb on + strand, within Shewana3_1995 at 2378.750 kb on - strand, within Shewana3_1995 at 2379.448 kb on + strand, within Shewana3_1995 at 2379.477 kb on + strand, within Shewana3_1995 at 2379.557 kb on - strand, within Shewana3_1995 at 2379.570 kb on + strand, within Shewana3_1995 at 2379.606 kb on + strand, within Shewana3_1995 at 2379.651 kb on + strand, within Shewana3_1995 at 2379.684 kb on - strand, within Shewana3_1995 at 2379.716 kb on + strand, within Shewana3_1995 at 2379.754 kb on + strand at 2379.802 kb on - strand at 2379.927 kb on - strand at 2379.983 kb on + strand at 2380.401 kb on - strand, within Shewana3_1996 at 2380.467 kb on + strand, within Shewana3_1996 at 2380.670 kb on + strand, within Shewana3_1996 at 2380.670 kb on + strand, within Shewana3_1996 at 2380.821 kb on - strand, within Shewana3_1996
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,376,986 + Shewana3_1994 0.43 +1.9 2,377,434 - Shewana3_1994 0.73 +1.3 2,377,945 + +0.9 2,378,450 - Shewana3_1995 0.28 -1.0 2,378,450 - Shewana3_1995 0.28 -0.8 2,378,521 - Shewana3_1995 0.31 +1.9 2,378,585 + Shewana3_1995 0.34 -0.9 2,378,750 - Shewana3_1995 0.42 -0.7 2,379,448 + Shewana3_1995 0.76 +1.9 2,379,477 + Shewana3_1995 0.77 +0.9 2,379,557 - Shewana3_1995 0.81 +1.3 2,379,570 + Shewana3_1995 0.82 +1.9 2,379,606 + Shewana3_1995 0.84 +0.9 2,379,651 + Shewana3_1995 0.86 +2.9 2,379,684 - Shewana3_1995 0.88 +0.5 2,379,716 + Shewana3_1995 0.89 +0.9 2,379,754 + +1.9 2,379,802 - +0.5 2,379,927 - +1.9 2,379,983 + +1.3 2,380,401 - Shewana3_1996 0.24 +1.3 2,380,467 + Shewana3_1996 0.30 +1.9 2,380,670 + Shewana3_1996 0.48 +0.5 2,380,670 + Shewana3_1996 0.48 +1.3 2,380,821 - Shewana3_1996 0.62 +1.9
Or see this region's nucleotide sequence