Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1950 and Shewana3_1951 overlap by 4 nucleotides Shewana3_1951 and Shewana3_1952 are separated by 121 nucleotides Shewana3_1952 and aspS are separated by 184 nucleotides
Shewana3_1950: Shewana3_1950 - putative methyltransferase (RefSeq), at 2,319,245 to 2,320,237
_1950
Shewana3_1951: Shewana3_1951 - putative methyltransferase (RefSeq), at 2,320,234 to 2,320,992
_1951
Shewana3_1952: Shewana3_1952 - diguanylate cyclase (RefSeq), at 2,321,114 to 2,323,927
_1952
Shewana3_1953: aspS - aspartyl-tRNA synthetase (RefSeq), at 2,324,112 to 2,325,887
aspS
Position (kb)
2321
2322
2323
2324 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2320.297 kb on + strand at 2320.334 kb on - strand, within Shewana3_1951 at 2320.406 kb on + strand, within Shewana3_1951 at 2320.505 kb on - strand, within Shewana3_1951 at 2320.540 kb on - strand, within Shewana3_1951 at 2320.568 kb on - strand, within Shewana3_1951 at 2320.857 kb on - strand, within Shewana3_1951 at 2321.181 kb on + strand at 2321.193 kb on - strand at 2321.268 kb on - strand at 2321.323 kb on - strand at 2321.409 kb on + strand, within Shewana3_1952 at 2321.437 kb on + strand, within Shewana3_1952 at 2321.460 kb on + strand, within Shewana3_1952 at 2321.761 kb on + strand, within Shewana3_1952 at 2321.790 kb on + strand, within Shewana3_1952 at 2321.795 kb on + strand, within Shewana3_1952 at 2322.055 kb on - strand, within Shewana3_1952 at 2322.113 kb on + strand, within Shewana3_1952 at 2322.206 kb on - strand, within Shewana3_1952 at 2322.232 kb on + strand, within Shewana3_1952 at 2322.240 kb on - strand, within Shewana3_1952 at 2322.240 kb on - strand, within Shewana3_1952 at 2322.240 kb on - strand, within Shewana3_1952 at 2322.267 kb on - strand, within Shewana3_1952 at 2322.430 kb on - strand, within Shewana3_1952 at 2322.430 kb on - strand, within Shewana3_1952 at 2322.447 kb on + strand, within Shewana3_1952 at 2322.455 kb on - strand, within Shewana3_1952 at 2322.488 kb on - strand, within Shewana3_1952 at 2322.557 kb on + strand, within Shewana3_1952 at 2322.685 kb on + strand, within Shewana3_1952 at 2322.696 kb on + strand, within Shewana3_1952 at 2322.810 kb on + strand, within Shewana3_1952 at 2322.940 kb on - strand, within Shewana3_1952 at 2322.957 kb on - strand, within Shewana3_1952 at 2322.976 kb on + strand, within Shewana3_1952 at 2323.210 kb on - strand, within Shewana3_1952 at 2323.254 kb on + strand, within Shewana3_1952 at 2323.296 kb on + strand, within Shewana3_1952 at 2323.302 kb on - strand, within Shewana3_1952 at 2323.340 kb on - strand, within Shewana3_1952 at 2323.348 kb on - strand, within Shewana3_1952 at 2323.451 kb on + strand, within Shewana3_1952 at 2323.495 kb on + strand, within Shewana3_1952 at 2323.756 kb on - strand at 2323.793 kb on - strand at 2323.809 kb on + strand at 2323.809 kb on + strand at 2323.809 kb on + strand at 2323.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,320,297 + +1.4 2,320,334 - Shewana3_1951 0.13 +0.6 2,320,406 + Shewana3_1951 0.23 +1.4 2,320,505 - Shewana3_1951 0.36 +0.1 2,320,540 - Shewana3_1951 0.40 +1.0 2,320,568 - Shewana3_1951 0.44 -0.3 2,320,857 - Shewana3_1951 0.82 -0.5 2,321,181 + +1.3 2,321,193 - +0.4 2,321,268 - -0.5 2,321,323 - +2.4 2,321,409 + Shewana3_1952 0.10 -1.9 2,321,437 + Shewana3_1952 0.11 +0.9 2,321,460 + Shewana3_1952 0.12 -1.6 2,321,761 + Shewana3_1952 0.23 +0.3 2,321,790 + Shewana3_1952 0.24 +0.4 2,321,795 + Shewana3_1952 0.24 +0.2 2,322,055 - Shewana3_1952 0.33 -0.3 2,322,113 + Shewana3_1952 0.36 -0.4 2,322,206 - Shewana3_1952 0.39 +0.5 2,322,232 + Shewana3_1952 0.40 -0.1 2,322,240 - Shewana3_1952 0.40 +0.4 2,322,240 - Shewana3_1952 0.40 +0.6 2,322,240 - Shewana3_1952 0.40 -1.8 2,322,267 - Shewana3_1952 0.41 +0.5 2,322,430 - Shewana3_1952 0.47 -0.8 2,322,430 - Shewana3_1952 0.47 -0.2 2,322,447 + Shewana3_1952 0.47 -0.0 2,322,455 - Shewana3_1952 0.48 +0.4 2,322,488 - Shewana3_1952 0.49 +1.2 2,322,557 + Shewana3_1952 0.51 +1.0 2,322,685 + Shewana3_1952 0.56 +1.4 2,322,696 + Shewana3_1952 0.56 +0.7 2,322,810 + Shewana3_1952 0.60 +0.1 2,322,940 - Shewana3_1952 0.65 +0.9 2,322,957 - Shewana3_1952 0.65 +0.2 2,322,976 + Shewana3_1952 0.66 -0.3 2,323,210 - Shewana3_1952 0.74 +0.3 2,323,254 + Shewana3_1952 0.76 -1.1 2,323,296 + Shewana3_1952 0.78 +0.1 2,323,302 - Shewana3_1952 0.78 -0.9 2,323,340 - Shewana3_1952 0.79 -0.5 2,323,348 - Shewana3_1952 0.79 -0.9 2,323,451 + Shewana3_1952 0.83 +0.4 2,323,495 + Shewana3_1952 0.85 +1.1 2,323,756 - +0.6 2,323,793 - +1.9 2,323,809 + +1.4 2,323,809 + +0.9 2,323,809 + -0.1 2,323,994 - -0.9
Or see this region's nucleotide sequence