Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1938

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1937 and Shewana3_1938 overlap by 4 nucleotidesShewana3_1938 and Shewana3_1939 overlap by 4 nucleotidesShewana3_1939 and thiG are separated by 1 nucleotidesthiG and thiH are separated by 2 nucleotides Shewana3_1937: Shewana3_1937 - thiamine-phosphate pyrophosphorylase (RefSeq), at 2,304,011 to 2,305,693 _1937 Shewana3_1938: Shewana3_1938 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,305,690 to 2,306,706 _1938 Shewana3_1939: Shewana3_1939 - thiamine biosynthesis protein ThiS (RefSeq), at 2,306,703 to 2,306,906 _1939 Shewana3_1940: thiG - thiazole synthase (RefSeq), at 2,306,908 to 2,307,666 thiG Shewana3_1941: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 2,307,669 to 2,308,784 thiH Position (kb) 2305 2306 2307Strain fitness (log2 ratio) -1 0 1 2 3at 2304.841 kb on + strand, within Shewana3_1937at 2304.886 kb on - strand, within Shewana3_1937at 2304.954 kb on + strand, within Shewana3_1937at 2304.962 kb on - strand, within Shewana3_1937at 2305.170 kb on - strand, within Shewana3_1937at 2305.175 kb on - strand, within Shewana3_1937at 2305.347 kb on - strand, within Shewana3_1937at 2305.512 kb on + strand, within Shewana3_1937at 2305.522 kb on + strand, within Shewana3_1937at 2305.633 kb on + strandat 2305.794 kb on + strand, within Shewana3_1938at 2305.888 kb on - strand, within Shewana3_1938at 2305.960 kb on - strand, within Shewana3_1938at 2306.164 kb on - strand, within Shewana3_1938at 2306.166 kb on + strand, within Shewana3_1938at 2306.350 kb on - strand, within Shewana3_1938at 2306.457 kb on - strand, within Shewana3_1938at 2306.803 kb on + strand, within Shewana3_1939at 2306.845 kb on + strand, within Shewana3_1939at 2306.853 kb on - strand, within Shewana3_1939at 2306.993 kb on + strand, within thiGat 2307.113 kb on + strand, within thiGat 2307.253 kb on + strand, within thiGat 2307.563 kb on + strand, within thiGat 2307.634 kb on + strandat 2307.634 kb on + strandat 2307.634 kb on + strandat 2307.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,304,841 + Shewana3_1937 0.49 -0.3
2,304,886 - Shewana3_1937 0.52 +2.9
2,304,954 + Shewana3_1937 0.56 -0.6
2,304,962 - Shewana3_1937 0.57 +0.0
2,305,170 - Shewana3_1937 0.69 +0.6
2,305,175 - Shewana3_1937 0.69 +0.1
2,305,347 - Shewana3_1937 0.79 +0.6
2,305,512 + Shewana3_1937 0.89 -0.6
2,305,522 + Shewana3_1937 0.90 -0.9
2,305,633 + +0.4
2,305,794 + Shewana3_1938 0.10 +0.9
2,305,888 - Shewana3_1938 0.19 -0.1
2,305,960 - Shewana3_1938 0.27 +1.5
2,306,164 - Shewana3_1938 0.47 +1.9
2,306,166 + Shewana3_1938 0.47 +1.4
2,306,350 - Shewana3_1938 0.65 +0.6
2,306,457 - Shewana3_1938 0.75 +0.6
2,306,803 + Shewana3_1939 0.49 +1.6
2,306,845 + Shewana3_1939 0.70 +1.2
2,306,853 - Shewana3_1939 0.74 -0.1
2,306,993 + thiG Shewana3_1940 0.11 -1.5
2,307,113 + thiG Shewana3_1940 0.27 -0.1
2,307,253 + thiG Shewana3_1940 0.45 +0.9
2,307,563 + thiG Shewana3_1940 0.86 +1.5
2,307,634 + +0.8
2,307,634 + +0.4
2,307,634 + +1.9
2,307,642 - +0.1

Or see this region's nucleotide sequence