Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1937 and Shewana3_1938 overlap by 4 nucleotides Shewana3_1938 and Shewana3_1939 overlap by 4 nucleotides Shewana3_1939 and thiG are separated by 1 nucleotides thiG and thiH are separated by 2 nucleotides
Shewana3_1937: Shewana3_1937 - thiamine-phosphate pyrophosphorylase (RefSeq), at 2,304,011 to 2,305,693
_1937
Shewana3_1938: Shewana3_1938 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,305,690 to 2,306,706
_1938
Shewana3_1939: Shewana3_1939 - thiamine biosynthesis protein ThiS (RefSeq), at 2,306,703 to 2,306,906
_1939
Shewana3_1940: thiG - thiazole synthase (RefSeq), at 2,306,908 to 2,307,666
thiG
Shewana3_1941: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 2,307,669 to 2,308,784
thiH
Position (kb)
2305
2306
2307 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2304.841 kb on + strand, within Shewana3_1937 at 2304.886 kb on - strand, within Shewana3_1937 at 2304.954 kb on + strand, within Shewana3_1937 at 2304.962 kb on - strand, within Shewana3_1937 at 2305.170 kb on - strand, within Shewana3_1937 at 2305.175 kb on - strand, within Shewana3_1937 at 2305.347 kb on - strand, within Shewana3_1937 at 2305.512 kb on + strand, within Shewana3_1937 at 2305.522 kb on + strand, within Shewana3_1937 at 2305.633 kb on + strand at 2305.794 kb on + strand, within Shewana3_1938 at 2305.888 kb on - strand, within Shewana3_1938 at 2305.960 kb on - strand, within Shewana3_1938 at 2306.164 kb on - strand, within Shewana3_1938 at 2306.166 kb on + strand, within Shewana3_1938 at 2306.350 kb on - strand, within Shewana3_1938 at 2306.457 kb on - strand, within Shewana3_1938 at 2306.803 kb on + strand, within Shewana3_1939 at 2306.845 kb on + strand, within Shewana3_1939 at 2306.853 kb on - strand, within Shewana3_1939 at 2306.993 kb on + strand, within thiG at 2307.113 kb on + strand, within thiG at 2307.253 kb on + strand, within thiG at 2307.563 kb on + strand, within thiG at 2307.634 kb on + strand at 2307.634 kb on + strand at 2307.634 kb on + strand at 2307.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,304,841 + Shewana3_1937 0.49 -0.3 2,304,886 - Shewana3_1937 0.52 +2.9 2,304,954 + Shewana3_1937 0.56 -0.6 2,304,962 - Shewana3_1937 0.57 +0.0 2,305,170 - Shewana3_1937 0.69 +0.6 2,305,175 - Shewana3_1937 0.69 +0.1 2,305,347 - Shewana3_1937 0.79 +0.6 2,305,512 + Shewana3_1937 0.89 -0.6 2,305,522 + Shewana3_1937 0.90 -0.9 2,305,633 + +0.4 2,305,794 + Shewana3_1938 0.10 +0.9 2,305,888 - Shewana3_1938 0.19 -0.1 2,305,960 - Shewana3_1938 0.27 +1.5 2,306,164 - Shewana3_1938 0.47 +1.9 2,306,166 + Shewana3_1938 0.47 +1.4 2,306,350 - Shewana3_1938 0.65 +0.6 2,306,457 - Shewana3_1938 0.75 +0.6 2,306,803 + Shewana3_1939 0.49 +1.6 2,306,845 + Shewana3_1939 0.70 +1.2 2,306,853 - Shewana3_1939 0.74 -0.1 2,306,993 + thiG Shewana3_1940 0.11 -1.5 2,307,113 + thiG Shewana3_1940 0.27 -0.1 2,307,253 + thiG Shewana3_1940 0.45 +0.9 2,307,563 + thiG Shewana3_1940 0.86 +1.5 2,307,634 + +0.8 2,307,634 + +0.4 2,307,634 + +1.9 2,307,642 - +0.1
Or see this region's nucleotide sequence