Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1937

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1936 and Shewana3_1937 are separated by 2 nucleotidesShewana3_1937 and Shewana3_1938 overlap by 4 nucleotides Shewana3_1936: Shewana3_1936 - thiamine biosynthesis protein ThiC (RefSeq), at 2,301,846 to 2,304,008 _1936 Shewana3_1937: Shewana3_1937 - thiamine-phosphate pyrophosphorylase (RefSeq), at 2,304,011 to 2,305,693 _1937 Shewana3_1938: Shewana3_1938 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,305,690 to 2,306,706 _1938 Position (kb) 2304 2305 2306Strain fitness (log2 ratio) -1 0 1 2 3at 2303.085 kb on + strand, within Shewana3_1936at 2303.178 kb on + strand, within Shewana3_1936at 2303.209 kb on + strand, within Shewana3_1936at 2303.685 kb on + strand, within Shewana3_1936at 2303.689 kb on - strand, within Shewana3_1936at 2303.971 kb on - strandat 2303.971 kb on - strandat 2303.987 kb on + strandat 2304.105 kb on - strandat 2304.237 kb on - strand, within Shewana3_1937at 2304.237 kb on - strand, within Shewana3_1937at 2304.841 kb on + strand, within Shewana3_1937at 2304.886 kb on - strand, within Shewana3_1937at 2304.954 kb on + strand, within Shewana3_1937at 2304.962 kb on - strand, within Shewana3_1937at 2305.170 kb on - strand, within Shewana3_1937at 2305.175 kb on - strand, within Shewana3_1937at 2305.347 kb on - strand, within Shewana3_1937at 2305.512 kb on + strand, within Shewana3_1937at 2305.522 kb on + strand, within Shewana3_1937at 2305.633 kb on + strandat 2305.794 kb on + strand, within Shewana3_1938at 2305.888 kb on - strand, within Shewana3_1938at 2305.960 kb on - strand, within Shewana3_1938at 2306.164 kb on - strand, within Shewana3_1938at 2306.166 kb on + strand, within Shewana3_1938at 2306.350 kb on - strand, within Shewana3_1938at 2306.457 kb on - strand, within Shewana3_1938

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,303,085 + Shewana3_1936 0.57 -1.1
2,303,178 + Shewana3_1936 0.62 -0.9
2,303,209 + Shewana3_1936 0.63 +0.1
2,303,685 + Shewana3_1936 0.85 +1.4
2,303,689 - Shewana3_1936 0.85 -0.9
2,303,971 - +0.6
2,303,971 - +0.9
2,303,987 + -0.2
2,304,105 - -0.9
2,304,237 - Shewana3_1937 0.13 -0.3
2,304,237 - Shewana3_1937 0.13 +0.4
2,304,841 + Shewana3_1937 0.49 -0.3
2,304,886 - Shewana3_1937 0.52 +2.9
2,304,954 + Shewana3_1937 0.56 -0.6
2,304,962 - Shewana3_1937 0.57 +0.0
2,305,170 - Shewana3_1937 0.69 +0.6
2,305,175 - Shewana3_1937 0.69 +0.1
2,305,347 - Shewana3_1937 0.79 +0.6
2,305,512 + Shewana3_1937 0.89 -0.6
2,305,522 + Shewana3_1937 0.90 -0.9
2,305,633 + +0.4
2,305,794 + Shewana3_1938 0.10 +0.9
2,305,888 - Shewana3_1938 0.19 -0.1
2,305,960 - Shewana3_1938 0.27 +1.5
2,306,164 - Shewana3_1938 0.47 +1.9
2,306,166 + Shewana3_1938 0.47 +1.4
2,306,350 - Shewana3_1938 0.65 +0.6
2,306,457 - Shewana3_1938 0.75 +0.6

Or see this region's nucleotide sequence