Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1924 and Shewana3_1925 are separated by 131 nucleotides Shewana3_1925 and Shewana3_1926 are separated by 741 nucleotides
Shewana3_1924: Shewana3_1924 - glucan 1,4-alpha-glucosidase (RefSeq), at 2,287,223 to 2,289,736
_1924
Shewana3_1925: Shewana3_1925 - major facilitator transporter (RefSeq), at 2,289,868 to 2,291,463
_1925
Shewana3_1926: Shewana3_1926 - YCII-related (RefSeq), at 2,292,205 to 2,292,483
_1926
Position (kb)
2289
2290
2291
2292 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2289.297 kb on + strand, within Shewana3_1924 at 2289.468 kb on + strand, within Shewana3_1924 at 2289.874 kb on - strand at 2289.895 kb on - strand at 2289.962 kb on - strand at 2290.028 kb on - strand, within Shewana3_1925 at 2290.132 kb on - strand, within Shewana3_1925 at 2290.306 kb on + strand, within Shewana3_1925 at 2290.346 kb on + strand, within Shewana3_1925 at 2290.653 kb on - strand, within Shewana3_1925 at 2290.888 kb on + strand, within Shewana3_1925 at 2291.499 kb on - strand at 2291.713 kb on + strand at 2291.742 kb on + strand at 2291.752 kb on + strand at 2291.760 kb on - strand at 2291.873 kb on + strand at 2291.910 kb on + strand at 2291.911 kb on + strand at 2291.918 kb on - strand at 2291.918 kb on - strand at 2292.109 kb on + strand at 2292.127 kb on - strand at 2292.190 kb on + strand at 2292.253 kb on - strand, within Shewana3_1926
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,289,297 + Shewana3_1924 0.82 -0.6 2,289,468 + Shewana3_1924 0.89 +1.1 2,289,874 - -0.5 2,289,895 - -1.2 2,289,962 - +0.9 2,290,028 - Shewana3_1925 0.10 -0.6 2,290,132 - Shewana3_1925 0.17 -0.2 2,290,306 + Shewana3_1925 0.27 +1.1 2,290,346 + Shewana3_1925 0.30 -1.3 2,290,653 - Shewana3_1925 0.49 -0.4 2,290,888 + Shewana3_1925 0.64 +0.9 2,291,499 - -0.6 2,291,713 + +1.9 2,291,742 + -0.1 2,291,752 + -1.5 2,291,760 - +0.3 2,291,873 + -0.5 2,291,910 + +0.8 2,291,911 + -0.2 2,291,918 - -0.1 2,291,918 - +1.2 2,292,109 + +0.3 2,292,127 - +2.9 2,292,190 + +0.6 2,292,253 - Shewana3_1926 0.17 +0.1
Or see this region's nucleotide sequence